joss paper + doc minor updates

.github/workflows/python-app.yml

@@ -34,4 +34,4 @@ jobs:
       #   run: brainglobe install -a example_mouse_100um
 
       - name: Testing CoperniFUS
-        run: pytest tests/test_viewer.py
+        run: pytest tests/test_pqtg.py

tests/_IGNORE_DEBUG_pqtg.py

@@ -0,0 +1,28 @@
+import weakref
+import pyqtgraph as pg
+
+pg.mkQApp()
+
+def test_getViewWidget():
+    view = pg.PlotWidget()
+    vref = weakref.ref(view)
+    item = pg.InfiniteLine()
+    view.addItem(item)
+    assert item.getViewWidget() is view
+    del view
+    assert vref() is None
+    assert item.getViewWidget() is None
+
+def test_getViewWidget_deleted():
+    view = pg.PlotWidget()
+    item = pg.InfiniteLine()
+    view.addItem(item)
+    assert item.getViewWidget() is view
+
+    # Arrange to have Qt automatically delete the view widget
+    obj = pg.QtWidgets.QWidget()
+    view.setParent(obj)
+    del obj
+
+    assert not pg.Qt.isQObjectAlive(view)
+    assert item.getViewWidget() is None

tests/test_viewer.py

@@ -1,44 +1,14 @@
-import weakref
-
-import pyqtgraph as pg
-
-pg.mkQApp()
-
-def test_getViewWidget():
-    view = pg.PlotWidget()
-    vref = weakref.ref(view)
-    item = pg.InfiniteLine()
-    view.addItem(item)
-    assert item.getViewWidget() is view
-    del view
-    assert vref() is None
-    assert item.getViewWidget() is None
-
-def test_getViewWidget_deleted():
-    view = pg.PlotWidget()
-    item = pg.InfiniteLine()
-    view.addItem(item)
-    assert item.getViewWidget() is view
-
-    # Arrange to have Qt automatically delete the view widget
-    obj = pg.QtWidgets.QWidget()
-    view.setParent(obj)
-    del obj
-
-    assert not pg.Qt.isQObjectAlive(view)
-    assert item.getViewWidget() is None
-
-# import pytest
-# from coperniFUS.viewer import Window, pyqtw
-
-# @pytest.fixture
-# def viewer_window(qtbot):
-#     """Fixture to create CoperniFUS viewer window."""
-#     window = Window(app=None, running_test=True)
-#     return window
-
-# def test_brain_atlas(viewer_window):
-#     """Test tha the example atlas has been loaded."""
-#     assert viewer_window.windowTitle() == "CoperniFUS"
-#     # assert viewer_window.get_module_object_from_name('BrainAtlas').bg_atlas.atlas_name == 'example_mouse_100um'
+import pytest
+from coperniFUS.viewer import Window, pyqtw
+
+@pytest.fixture
+def viewer_window(qtbot):
+    """Fixture to create CoperniFUS viewer window."""
+    window = Window(app=None, running_test=True)
+    return window
+
+def test_brain_atlas(viewer_window):
+    """Test tha the example atlas has been loaded."""
+    assert viewer_window.windowTitle() == "CoperniFUS"
+    # assert viewer_window.get_module_object_from_name('BrainAtlas').bg_atlas.atlas_name == 'example_mouse_100um'