Code

Capture profiling statistics#1110

Code

Merged

matt-graham merged 48 commits intomasterUCL/TLOmodel:masterfrom wgraham/capture-profiling-statsUCL/TLOmodel:wgraham/capture-profiling-statsCopy head branch name to clipboardNov 27, 2023

Commits

Commits on Sep 21, 2023

• Add placeholder function for recording stats

  willGraham01

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• scale_run returns the simulation object

  willGraham01

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• Record population dataframe size, memory usage in MB, and times extended

  willGraham01

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• Sort include

  willGraham01

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• Force ignore of profiling results directory, and force typing of stats

  willGraham01

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• Avoid list values in stats file

  willGraham01

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• Isort pass number 2

  willGraham01

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• Add psutil to requirements to capture disk IO

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  willGraham01

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• Apply suggestions from code review

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  willGraham01

  and

  matt-graham

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• Capture disk statistics too

  willGraham01

  committed
  9a0d3b6

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• Capture disk I/O status

  willGraham01

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• Alter output format to optionally include HTML, and default-include stats

  willGraham01

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• Avoid creation of pyisession file, manage through stats file

  willGraham01

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• Lint file

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• Obey the linter

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• isort hook

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Commits on Oct 6, 2023

• Merge branch 'master' into wgraham/capture-profiling-stats

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  matt-graham

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Commits on Nov 13, 2023

• Apply suggestions from code review

  matt-graham

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• Merge branch 'master' into wgraham/capture-profiling-stats

  matt-graham

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Commits on Nov 20, 2023

• Inline help string definition

  matt-graham

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• Remove separate paths and parameters modules

  matt-graham

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• Inline help string and use default arg formatter

  matt-graham

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  f2027b6

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• Simplify paths and sim outputs to profiling directory

  matt-graham

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• Use relative import

  matt-graham

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• Use passed directory rather than constant

  matt-graham

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• Factor out saving arguments to JSON

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  matt-graham

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• Use ignore_warnings argument

  matt-graham

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• Use relative import

  matt-graham

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• Change save args function call signature

  matt-graham

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• Refactor run_profiling output writing

  matt-graham

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• Revert relative imports

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  matt-graham

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• Refactoring of run_profiling

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  matt-graham

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• Make logging of population checksum optional

  matt-graham

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• Change profiling run arguments

  matt-graham

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• Correct scale_run type annotations

  matt-graham

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• Add option to save raw profiler output

  matt-graham

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• Expose key simulation params from run_profiling

  matt-graham

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• Parse key-value pairs directly in parse_args

  matt-graham

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• Rename CLI argument for consistency with function

  matt-graham

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• Unpack CLI args in to function call

  matt-graham

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• Add basic check to key-value parsing

  matt-graham

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• Use variable to set profiling results directory in workflow

  matt-graham

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• Exclude profiling_results from distributions

  matt-graham

  committed
  44dbd84

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• Remove whitespace to satisfy isort

  matt-graham

  committed
  fa8f73d

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• Merge branch 'master' into wgraham/capture-profiling-stats

  matt-graham

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Commits on Nov 22, 2023

• Ensure html_output Path converted to string to avoid JSON error

  matt-graham

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Commits on Nov 24, 2023

• Increase scheduled profiling job timeout

  matt-graham

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• Merge branch 'master' into wgraham/capture-profiling-stats

  matt-graham

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