Name change (#7)

* Change OSQAT to HOQST in README

* Modify some comments in HOSQATTutorials.jl

* Update the closed-system introduction

* Rebuild introduction-02

* Clean up folders

Author: neversakura

Project.toml

@@ -1,7 +1,7 @@
-name = "OSQATTutorials"
+name = "HOQSTTutorials"
 uuid = "355a68e2-8a29-4473-87d2-0bdae3433bdb"
 authors = ["Huo Chen <[email protected]>"]
-version = "0.1.0"
+version = "0.2.0"
 
 [deps]
 Arpack = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"

README.md

@@ -1,39 +1,39 @@
-# OSQATTutorials.jl
-Tutorials for open system quantum annealing toolbox(OSQAT). This repo is inspired by [SciMLTutorials](https://github.com/SciML/SciMLTutorials.jl) so the workflow is the same. Because currently `OSQAT` and `OSQATTutorials.jl` are not officially registered, you need manually install these packages.
+# HOQSTTutorials.jl
+Tutorials for Hamiltonian Open Quantum System Toolkit(HOQST). This repo is inspired by [SciMLTutorials](https://github.com/SciML/SciMLTutorials.jl) so the workflow is the same. Because currently `HOQST` and `HOQSTTutorials.jl` are not officially registered, you need to manually install these packages.
 
 ## Table of Contents
 
 - Introduction
-  - [Introduction to OSQAT through closed-system simulation](https://uscqserver.github.io/OSQATTutorials.jl/html/introduction/01-closed_system.html)
-  - [Introduction to OSQAT through adiabatic master equation](https://uscqserver.github.io/OSQATTutorials.jl/html/introduction/02-single_qubit_ame.html)
-  - [Redfield equation with multi-axis noise](https://uscqserver.github.io/OSQATTutorials.jl/html/introduction/03-redfield_multi_axis_noise.html)
-  - [Spin-fluctuator model](https://uscqserver.github.io/OSQATTutorials.jl/html/introduction/04-spin_fluctuators.html)
-  - [AME Spin-fluctuator model](https://uscqserver.github.io/OSQATTutorials.jl/html/introduction/05-ame_spin_fluctuators.html)
+  - [Introduction to HOQST through closed-system simulation](https://uscqserver.github.io/HOQSTTutorials.jl/html/introduction/01-closed_system.html)
+  - [Introduction to HOQST through adiabatic master equation](https://uscqserver.github.io/HOQSTTutorials.jl/html/introduction/02-single_qubit_ame.html)
+  - [Redfield equation with multi-axis noise](https://uscqserver.github.io/HOQSTTutorials.jl/html/introduction/03-redfield_multi_axis_noise.html)
+  - [Spin-fluctuator model](https://uscqserver.github.io/HOQSTTutorials.jl/html/introduction/04-spin_fluctuators.html)
+  - [AME Spin-fluctuator model](https://uscqserver.github.io/HOQSTTutorials.jl/html/introduction/05-ame_spin_fluctuators.html)
 - Hamiltonian
-  - [Custom eigendecomposition function](https://uscqserver.github.io/OSQATTutorials.jl/html/hamiltonian/01-custom-eigen.html)
+  - [Custom eigendecomposition function](https://uscqserver.github.io/HOQSTTutorials.jl/html/hamiltonian/01-custom-eigen.html)
 - Redfield
-  - [Non-positivity in Redfield equation](https://uscqserver.github.io/OSQATTutorials.jl/html/redfield/01-non_positivity_redfield.html)
-  - [Introduction to polaron transformed Redfield equation](https://uscqserver.github.io/OSQATTutorials.jl/html/redfield/02-polaron-transformed-redfield.html)
-  - [Introduction to CGME and ULE](https://uscqserver.github.io/OSQATTutorials.jl/html/redfield/03-CGME_ULE.html)
+  - [Non-positivity in Redfield equation](https://uscqserver.github.io/HOQSTTutorials.jl/html/redfield/01-non_positivity_redfield.html)
+  - [Introduction to polaron transformed Redfield equation](https://uscqserver.github.io/HOQSTTutorials.jl/html/redfield/02-polaron-transformed-redfield.html)
+  - [Introduction to CGME and ULE](https://uscqserver.github.io/HOQSTTutorials.jl/html/redfield/03-CGME_ULE.html)
 
 ## Contributing
 
-First of all, make sure that your current directory is `OSQATTutorials`. All
+First of all, make sure that your current directory is `HOQSTTutorials`. All
 of the files are generated from the Weave.jl files in the `tutorials` folder.
 To run the generation process, do for example:
 
 ```julia
-using Pkg, OSQATTutorials
-cd(joinpath(dirname(pathof(OSQATTutorials)), ".."))
+using Pkg, HOQSTTutorials
+cd(joinpath(dirname(pathof(HOQSTTutorials)), ".."))
 Pkg.pkg"activate ."
 Pkg.pkg"instantiate"
-OSQATTutorials.weave_file("introduction","01-closed_system.jmd")
+HOQSTTutorials.weave_file("introduction","01-closed_system.jmd")
 ```
 
 To generate all of the notebooks, do:
 
 ```julia
-OSQATTutorials.weave_all()
+HOQSTTutorials.weave_all()
 ```
 
 If you add new tutorials which require new packages, simply updating your local

html/introduction/01-closed_system.html

@@ -663,7 +663,7 @@ <h5>Huo Chen</h5>
         </div>
 
         <h2>Correlation function in polaron frame</h2>
-<p>This is an tutorial for using polaron transformed Redfield equation &#40;PTRE&#41; in OSQAT. For more details on PTRE, <a href="https://link.springer.com/article/10.1007&#37;2Fs11467-016-0540-2">Xu and Cao</a> is a good reference.</p>
+<p>This is an tutorial for using polaron transformed Redfield equation &#40;PTRE&#41; in HOQST. For more details on PTRE, <a href="https://link.springer.com/article/10.1007&#37;2Fs11467-016-0540-2">Xu and Cao</a> is a good reference.</p>
 <p>In this example, we solve both Redfield equation and PTRE for a single qubit model with system Hamiltonian</p>
 <p class="math">\[
 H_\mathrm{S}=\epsilon \sigma_z + \Delta \sigma_x