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Amy/package v2 #326

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a47e4ea
package aggregation updates
amytangzheng Sep 11, 2024
e3ad8d1
Merge branch 'dev' of https://github.com/Watts-Lab/team_comm_tools in…
amytangzheng Sep 18, 2024
b2ed12a
updates to gini dependency
amytangzheng Sep 18, 2024
c6c64bd
Bump path-to-regexp and express in /website (#298)
dependabot[bot] Sep 23, 2024
e060a44
Bump nltk from 3.8.1 to 3.9 (#297)
dependabot[bot] Sep 23, 2024
6a05e80
Bump body-parser and express in /website (#296)
dependabot[bot] Sep 23, 2024
1c72695
Check embedding update (#295)
xehu Sep 23, 2024
607548a
Merge branch 'main' into dev
xehu Sep 23, 2024
650197e
Update README.md to remove col = "message"
xehu Sep 23, 2024
d35aeb1
updated user aggregation methods (max)
amytangzheng Sep 27, 2024
36cd76e
Closes #302.
xehu Sep 27, 2024
21987f3
Amy/website (#301)
amytangzheng Oct 7, 2024
119efe4
Update github-actions-website.yaml (#309)
xehu Oct 7, 2024
6d25efd
Update github-actions-feature_dict.yaml (#308)
xehu Oct 7, 2024
7e87679
Package updates in Amy/website (#310)
xehu Oct 7, 2024
5678567
Update package-lock.json to local version
xehu Oct 7, 2024
d75837f
Update package-lock.json
xehu Oct 7, 2024
143cb77
Update package.json
xehu Oct 7, 2024
28f85f7
Update package-lock.json
xehu Oct 7, 2024
8b8bd24
Fix "@babel/plugin-proposal-private-property-in-object" error (#311)
xehu Oct 7, 2024
89cd16b
upgrade node packages
xehu Oct 7, 2024
d04037d
update team page + try to remove some of the deprecated packages
xehu Oct 7, 2024
bdf7035
Revert "update team page + try to remove some of the deprecated packa…
xehu Oct 7, 2024
ec2ed64
revert attempts to upgrade packages
xehu Oct 7, 2024
d83f854
Denormalize liwc (#312)
xehu Oct 7, 2024
7905240
address https://github.com/Watts-Lab/team_comm_tools/issues/300 (#313)
xehu Oct 7, 2024
bf762d0
Address issues with making feature names more clear; have cleaner def…
xehu Oct 8, 2024
1dad080
small fix to ensure filtered_dict does not generate in every run
xehu Oct 8, 2024
ed17d7a
merge in main + bump dev's version up for next time
xehu Oct 8, 2024
6b94149
PATCH FIX: Defaults in 0.1.4 were incorrectly specified
xehu Oct 8, 2024
576a376
updates to package aggregation
amytangzheng Oct 16, 2024
fd50f83
Merge pull request #320 from Watts-Lab/temp-dev
xehu Oct 16, 2024
c4200c5
updates to package aggregation
amytangzheng Oct 16, 2024
10f325d
checking valid methods and columns
amytangzheng Oct 23, 2024
653e386
updates to checking numeric columns
amytangzheng Oct 23, 2024
7c9545d
package aggregation updates
amytangzheng Sep 11, 2024
7c73f8d
updates to gini dependency
amytangzheng Sep 18, 2024
b0bbb7a
updated user aggregation methods (max)
amytangzheng Sep 27, 2024
37080e8
updates to package aggregation
amytangzheng Oct 16, 2024
7d75712
updates to package aggregation
amytangzheng Oct 16, 2024
1c861a3
checking valid methods and columns
amytangzheng Oct 23, 2024
1da2ecd
updates to checking numeric columns
amytangzheng Oct 23, 2024
b10bdee
package aggregation updates
amytangzheng Nov 6, 2024
d007ae8
Merge branch 'amy/package_v2' of https://github.com/Watts-Lab/team_co…
amytangzheng Nov 6, 2024
3fca434
updates to package aggregation
amytangzheng Nov 6, 2024
a36107d
updates to requirements.txt
amytangzheng Nov 8, 2024
e050fb6
updates to featurize.py
amytangzheng Nov 8, 2024
3f31f07
updates to checking columns are in data
amytangzheng Nov 8, 2024
4f562cc
Merge branch 'dev' of https://github.com/Watts-Lab/team_comm_tools in…
amytangzheng Nov 10, 2024
2892a3c
remove local file in featurize
xehu Dec 2, 2024
b027d27
remove commented out func in featurize
xehu Dec 2, 2024
84c126e
correct issue with empty conversation aagg features
xehu Dec 2, 2024
4825972
remove excess preprocessing call
xehu Dec 2, 2024
3ba2082
add error checking and removing custom vector functionality from this PR
xehu Dec 2, 2024
1e0d3f2
remove redundant call to preprocess chat data again
xehu Dec 2, 2024
6a7cccf
restore check embeddings call
xehu Dec 3, 2024
51d833f
code refactor for conversation and user aggregation / error checking
xehu Dec 3, 2024
23b957b
correct issue in which we were looking for columns to summarize that …
xehu Dec 3, 2024
c4d5608
rebase with dev
xehu Dec 3, 2024
7e8d985
add back sum functionality (with warning) and clean up user aggs
xehu Dec 3, 2024
c34ee7f
fix issue with user centroids
xehu Dec 3, 2024
a5362bb
update featurize.py
xehu Dec 3, 2024
727b91e
add test for package custom aggregation
xehu Dec 3, 2024
0643dd3
update documentations
xehu Dec 3, 2024
7141bae
update docs
xehu Dec 3, 2024
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144 changes: 127 additions & 17 deletions docs/build/html/_sources/examples.rst.txt

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15 changes: 12 additions & 3 deletions docs/build/html/_sources/features/index.rst.txt
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Expand Up @@ -32,7 +32,11 @@ Utterance-Level features are calculated *first* in the Toolkit, as many conversa

Conversation-Level Features
****************************
Once utterance-level features are computed, we compute conversation-level features; some of these features represent an aggregation of utterance-level information (for example, the "average level of positivity" in a conversation is simply the mean positivity score for each utterance). Other conversation-level features are constructs that are defined only at the conversation-level, such as the level of "burstiness" in a team's communication patterns.

Base Conversation-Level Features
+++++++++++++++++++++++++++++++++++

The following features are constructs that are defined only at the conversation-level, such as the level of "burstiness" in a team's communication patterns. We call these the "base" conversation-level features, and they can be accessed using a property of the ``FeatureBuilder`` object: ``FeatureBuilder.conv_features_base``.

.. toctree::
:maxdepth: 1
Expand All @@ -46,12 +50,17 @@ Once utterance-level features are computed, we compute conversation-level featur
within_person_discursive_range
turn_taking_features

Conversation-Level Aggregates
+++++++++++++++++++++++++++++++++++
Once utterance-level features are computed, we compute conversation-level features; some of these features represent an aggregation of utterance-level information (for example, the "average level of positivity" in a conversation is simply the mean positivity score for each utterance).

By default, all numeric attributes generated at the utterance (chat) level are aggregated using the functions ``mean``, ``max``, ``min``, and ``stdev``. However, this behavior can be customized, with details in the Worked Example (see :ref:`custom_aggregation`).

Speaker- (User) Level Features
*********************************
User-level features generally represent an aggregation of features at the utterance- level (for example, the average number of words spoken *by a particular user*). There is therefore limited speaker-level feature documentation, other than a function used to compute the "network" of other speakers that an individual interacts with in a conversation.

You may reference the :ref:`Speaker (User)-Level Features Page <user_level_features>` for more information.

You may reference the :ref:`Speaker (User)-Level Features Page <user_level_features>` for more information, as well as the details in the Worked Example (see :ref:`custom_aggregation`).

.. toctree::
:maxdepth: 1
Expand Down
177 changes: 145 additions & 32 deletions docs/build/html/examples.html

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91 changes: 60 additions & 31 deletions docs/build/html/feature_builder.html

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20 changes: 10 additions & 10 deletions docs/build/html/features/burstiness.html
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Expand Up @@ -52,18 +52,18 @@
<li class="toctree-l1 current"><a class="reference internal" href="index.html">Features: Technical Documentation</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="index.html#utterance-chat-level-features">Utterance- (Chat) Level Features</a></li>
<li class="toctree-l2 current"><a class="reference internal" href="index.html#conversation-level-features">Conversation-Level Features</a><ul class="current">
<li class="toctree-l3 current"><a class="current reference internal" href="#">burstiness module</a><ul>
<li class="toctree-l4"><a class="reference internal" href="#features.burstiness.burstiness"><code class="docutils literal notranslate"><span class="pre">burstiness()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="#features.burstiness.get_team_burstiness"><code class="docutils literal notranslate"><span class="pre">get_team_burstiness()</span></code></a></li>
<li class="toctree-l3 current"><a class="reference internal" href="index.html#base-conversation-level-features">Base Conversation-Level Features</a><ul class="current">
<li class="toctree-l4 current"><a class="current reference internal" href="#">burstiness module</a></li>
<li class="toctree-l4"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l4"><a class="reference internal" href="get_all_DD_features.html">get_all_DD_features module</a></li>
<li class="toctree-l4"><a class="reference internal" href="discursive_diversity.html">discursive_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l4"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l4"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l3"><a class="reference internal" href="get_all_DD_features.html">get_all_DD_features module</a></li>
<li class="toctree-l3"><a class="reference internal" href="discursive_diversity.html">discursive_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l3"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l3"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
<li class="toctree-l3"><a class="reference internal" href="index.html#conversation-level-aggregates">Conversation-Level Aggregates</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="index.html#speaker-user-level-features">Speaker- (User) Level Features</a></li>
Expand Down
21 changes: 10 additions & 11 deletions docs/build/html/features/discursive_diversity.html
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Expand Up @@ -52,19 +52,18 @@
<li class="toctree-l1 current"><a class="reference internal" href="index.html">Features: Technical Documentation</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="index.html#utterance-chat-level-features">Utterance- (Chat) Level Features</a></li>
<li class="toctree-l2 current"><a class="reference internal" href="index.html#conversation-level-features">Conversation-Level Features</a><ul class="current">
<li class="toctree-l3"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
<li class="toctree-l3"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l3"><a class="reference internal" href="get_all_DD_features.html">get_all_DD_features module</a></li>
<li class="toctree-l3 current"><a class="current reference internal" href="#">discursive_diversity module</a><ul>
<li class="toctree-l4"><a class="reference internal" href="#features.discursive_diversity.get_DD"><code class="docutils literal notranslate"><span class="pre">get_DD()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="#features.discursive_diversity.get_cosine_similarity"><code class="docutils literal notranslate"><span class="pre">get_cosine_similarity()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="#features.discursive_diversity.get_unique_pairwise_combos"><code class="docutils literal notranslate"><span class="pre">get_unique_pairwise_combos()</span></code></a></li>
<li class="toctree-l3 current"><a class="reference internal" href="index.html#base-conversation-level-features">Base Conversation-Level Features</a><ul class="current">
<li class="toctree-l4"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
<li class="toctree-l4"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l4"><a class="reference internal" href="get_all_DD_features.html">get_all_DD_features module</a></li>
<li class="toctree-l4 current"><a class="current reference internal" href="#">discursive_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l4"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l4"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l3"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l3"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
<li class="toctree-l3"><a class="reference internal" href="index.html#conversation-level-aggregates">Conversation-Level Aggregates</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="index.html#speaker-user-level-features">Speaker- (User) Level Features</a></li>
Expand Down
20 changes: 10 additions & 10 deletions docs/build/html/features/get_all_DD_features.html
Original file line number Diff line number Diff line change
Expand Up @@ -52,18 +52,18 @@
<li class="toctree-l1 current"><a class="reference internal" href="index.html">Features: Technical Documentation</a><ul class="current">
<li class="toctree-l2"><a class="reference internal" href="index.html#utterance-chat-level-features">Utterance- (Chat) Level Features</a></li>
<li class="toctree-l2 current"><a class="reference internal" href="index.html#conversation-level-features">Conversation-Level Features</a><ul class="current">
<li class="toctree-l3"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
<li class="toctree-l3"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l3 current"><a class="current reference internal" href="#">get_all_DD_features module</a><ul>
<li class="toctree-l4"><a class="reference internal" href="#features.get_all_DD_features.conv_to_float_arr"><code class="docutils literal notranslate"><span class="pre">conv_to_float_arr()</span></code></a></li>
<li class="toctree-l4"><a class="reference internal" href="#features.get_all_DD_features.get_DD_features"><code class="docutils literal notranslate"><span class="pre">get_DD_features()</span></code></a></li>
<li class="toctree-l3 current"><a class="reference internal" href="index.html#base-conversation-level-features">Base Conversation-Level Features</a><ul class="current">
<li class="toctree-l4"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
<li class="toctree-l4"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l4 current"><a class="current reference internal" href="#">get_all_DD_features module</a></li>
<li class="toctree-l4"><a class="reference internal" href="discursive_diversity.html">discursive_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l4"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l4"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="discursive_diversity.html">discursive_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l3"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l3"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
<li class="toctree-l3"><a class="reference internal" href="index.html#conversation-level-aggregates">Conversation-Level Aggregates</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="index.html#speaker-user-level-features">Speaker- (User) Level Features</a></li>
Expand Down
32 changes: 22 additions & 10 deletions docs/build/html/features/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -71,14 +71,18 @@
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="#conversation-level-features">Conversation-Level Features</a><ul>
<li class="toctree-l3"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
<li class="toctree-l3"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l3"><a class="reference internal" href="get_all_DD_features.html">get_all_DD_features module</a></li>
<li class="toctree-l3"><a class="reference internal" href="discursive_diversity.html">discursive_diversity module</a></li>
<li class="toctree-l3"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l3"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l3"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
<li class="toctree-l3"><a class="reference internal" href="#base-conversation-level-features">Base Conversation-Level Features</a><ul>
<li class="toctree-l4"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
<li class="toctree-l4"><a class="reference internal" href="information_diversity.html">information_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="../utils/gini_coefficient.html">gini_coefficient module</a></li>
<li class="toctree-l4"><a class="reference internal" href="get_all_DD_features.html">get_all_DD_features module</a></li>
<li class="toctree-l4"><a class="reference internal" href="discursive_diversity.html">discursive_diversity module</a></li>
<li class="toctree-l4"><a class="reference internal" href="variance_in_DD.html">variance_in_DD module</a></li>
<li class="toctree-l4"><a class="reference internal" href="within_person_discursive_range.html">within_person_discursive_range module</a></li>
<li class="toctree-l4"><a class="reference internal" href="turn_taking_features.html">turn_taking_features module</a></li>
</ul>
</li>
<li class="toctree-l3"><a class="reference internal" href="#conversation-level-aggregates">Conversation-Level Aggregates</a></li>
</ul>
</li>
<li class="toctree-l2"><a class="reference internal" href="#speaker-user-level-features">Speaker- (User) Level Features</a><ul>
Expand Down Expand Up @@ -146,7 +150,9 @@ <h2>Utterance- (Chat) Level Features<a class="headerlink" href="#utterance-chat-
</section>
<section id="conversation-level-features">
<h2>Conversation-Level Features<a class="headerlink" href="#conversation-level-features" title="Link to this heading"></a></h2>
<p>Once utterance-level features are computed, we compute conversation-level features; some of these features represent an aggregation of utterance-level information (for example, the “average level of positivity” in a conversation is simply the mean positivity score for each utterance). Other conversation-level features are constructs that are defined only at the conversation-level, such as the level of “burstiness” in a team’s communication patterns.</p>
<section id="base-conversation-level-features">
<h3>Base Conversation-Level Features<a class="headerlink" href="#base-conversation-level-features" title="Link to this heading"></a></h3>
<p>The following features are constructs that are defined only at the conversation-level, such as the level of “burstiness” in a team’s communication patterns. We call these the “base” conversation-level features, and they can be accessed using a property of the <code class="docutils literal notranslate"><span class="pre">FeatureBuilder</span></code> object: <code class="docutils literal notranslate"><span class="pre">FeatureBuilder.conv_features_base</span></code>.</p>
<div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="burstiness.html">burstiness module</a></li>
Expand All @@ -160,10 +166,16 @@ <h2>Conversation-Level Features<a class="headerlink" href="#conversation-level-f
</ul>
</div>
</section>
<section id="conversation-level-aggregates">
<h3>Conversation-Level Aggregates<a class="headerlink" href="#conversation-level-aggregates" title="Link to this heading"></a></h3>
<p>Once utterance-level features are computed, we compute conversation-level features; some of these features represent an aggregation of utterance-level information (for example, the “average level of positivity” in a conversation is simply the mean positivity score for each utterance).</p>
<p>By default, all numeric attributes generated at the utterance (chat) level are aggregated using the functions <code class="docutils literal notranslate"><span class="pre">mean</span></code>, <code class="docutils literal notranslate"><span class="pre">max</span></code>, <code class="docutils literal notranslate"><span class="pre">min</span></code>, and <code class="docutils literal notranslate"><span class="pre">stdev</span></code>. However, this behavior can be customized, with details in the Worked Example (see <a class="reference internal" href="../examples.html#custom-aggregation"><span class="std std-ref">Custom Aggregation</span></a>).</p>
</section>
</section>
<section id="speaker-user-level-features">
<h2>Speaker- (User) Level Features<a class="headerlink" href="#speaker-user-level-features" title="Link to this heading"></a></h2>
<p>User-level features generally represent an aggregation of features at the utterance- level (for example, the average number of words spoken <em>by a particular user</em>). There is therefore limited speaker-level feature documentation, other than a function used to compute the “network” of other speakers that an individual interacts with in a conversation.</p>
<p>You may reference the <a class="reference internal" href="../utils/calculate_user_level_features.html#user-level-features"><span class="std std-ref">Speaker (User)-Level Features Page</span></a> for more information.</p>
<p>You may reference the <a class="reference internal" href="../utils/calculate_user_level_features.html#user-level-features"><span class="std std-ref">Speaker (User)-Level Features Page</span></a> for more information, as well as the details in the Worked Example (see <a class="reference internal" href="../examples.html#custom-aggregation"><span class="std std-ref">Custom Aggregation</span></a>).</p>
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<li class="toctree-l1"><a class="reference internal" href="get_user_network.html">get_user_network module</a></li>
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