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Migrate `mri_scanner` to the new database abstraction #437

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Run time

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Job	Run time
Strict type checks (3.11)	35s
Unit tests (3.11)	34s
Strict type checks (3.12)	40s
Global type checks (3.11)	40s
Unit tests (3.12)	44s
Global type checks (3.12)	43s
Lints (3.11)	34s
Lints (3.12)	39s
	5m 9s