Skip to content

Perturbation Analysis in the scverse ecosystem.

License

Notifications You must be signed in to change notification settings

bio-datascience/pertpy

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Black Build Codecov License PyPI Python Version Read the Docs Test PyPI

pertpy

Features

  • Differential cell type perturbation analysis with Augurpy
  • Analysis of CRISPR-KO screens with Mixscape
  • Compositional analysis with Milo and tascCODA

Installation

You can install pertpy via pip from PyPI:

$ pip install pertpy

Usage

Please see Usage for details.

Credits

This package was created with cookietemple using Cookiecutter based on Hypermodern_Python_Cookiecutter.

About

Perturbation Analysis in the scverse ecosystem.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Jupyter Notebook 66.4%
  • Python 33.2%
  • Other 0.4%