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feat: simplify unify containers#959

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daler wants to merge 147 commits intomasterbioconda/bioconda-utils:masterfrom simplify-unify-containersbioconda/bioconda-utils:simplify-unify-containersCopy head branch name to clipboard

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Commits

Commits on Feb 9, 2024

• initial migration of container infra from bioconda-containers

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• first draft of build script

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Commits on Feb 11, 2024

• rename/reorganize

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• parameterize busybox image to copy from

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• git checkout parameterized branch

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• parameterize busybox image

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• depend on passed-in conda/mamba versions

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• first round of refactoring build-images.yml

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• move generic build to top, and adjust workflow

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Commits on Feb 12, 2024

• split out base-debian into an independent job

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• factor out archs

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• add build-env and create-env

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• try using branch name for now

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Commits on Feb 13, 2024

• fix path

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• rm redundant if clause

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• parameterize create-env test to use local images

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• check for existing tags

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• allow missing repository on quay.io if configured

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• add ARG for next FROM context

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• add build script for local testing (may be moved later)

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• add docs

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• parameterize archs

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• rm manifests by default before building locally

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• add switches to build each container

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Commits on Feb 15, 2024

• fix arg

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• use python (which will come from conda-forge)

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Commits on Feb 17, 2024

• improve comments in build.sh

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• warn -> error

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• move test build-args closer to actual test

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• clean up buildah inspect output

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  be2b3f0

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• overhaul how tests are run, plus notes & comments

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• warn -> error in workflow

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  06b138c

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• rm build docker container from prev workflow

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• first attempt at pushing base-debian

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• for now always try pushing

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• hard code registry like bioconda-containers

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• add comments and ids to workflow

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• start support for logging

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• attempt to control github actions via log

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• mess with conditionals

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• single-quote to match others

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• no env var

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  55919a1

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• now try version bump

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  7b15c02

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• more conditional

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• enable builds and pushes for other containers

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  b4d4cbf

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• swap out registry depending on if tag exists

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• do registry swap for create-env

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• lots o' comments

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• TIL GHA expressions work in comments

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• missing will now become error

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• bump just base version to test behavior

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• explicitly specify (single) tag, and add to bioconda-utils version

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Commits on Feb 18, 2024

• be better about tags

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• fix tags

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• add "base" to base version

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• add base prefix to upload steps

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• bump version to ensure 'latest' tags get pushed

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• move pushes to end

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• runs-on

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• don't depend on test

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• fix job outputs

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• better message when tag exists

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• comments cleanup

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• add test before push

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  1ffb34d

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• typo

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• typo

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• keep recipes in work dir

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• activate env in test

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• eval hook

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• include output for bioconda-utils version in job

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• fix names

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  a428b4b

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• bump version for end-to-end testing

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  aedd032

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• don't use "localhost" as registry for docker

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• registry includes the slash

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Commits on Feb 19, 2024

• convert back to steps rather than jobs

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• need to podman push images to docker-daemon so docker can use

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• update build.sh for local tests

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• comments and cleanup

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• tags need bioconda-utils version

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• use correct output

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• attempt pushing to docker-daemon

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• disable some jobs so we can do some container pushing tests

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• try pushing to ghcr.io

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• rm push to docker daemon

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• login to ghcr

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• test pull from ghcr

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• yaml syntax

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• try building everything and pushing/pulling to/from ghcr.io

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• re-enable build-others job

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• get bioconda-utils version from step output

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Commits on Feb 20, 2024

• get bioconda-utils version from build-other job

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• aaaand use right output

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• push the right image

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• add additional label to tie to bioconda-utils

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  f45e2ff

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• fix label

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• new version number to see if ghcr will make public

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• ensure all tags are pulled

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• ensure latest manifest is pushed in the first place

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• use job-level tag

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• use jobs not steps

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Commits on Feb 22, 2024

• typo in missing argument handling

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• re-enable library tests

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Commits on Feb 27, 2024

• create & store local version of locale

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• overhaul how everything is configured

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  4c89ac7

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• cleanup

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  2c16506

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• copied bioconda-utils version expected to be already checked out

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• simplify creating requirements

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• first pass overhauling simplified & unified builds GH Actions

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• Merge branch 'master' into simplify-unify-containers

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• reenable

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• disable main tests

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• fix job names

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• move ghcr login back to main workflow

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• log in to and use ghcr.io, not localhost registry

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Commits on Feb 28, 2024

• don't use localhost

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• disable test for now

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• manifest push

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• be explicit about base vs bioconda tags

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• still need TAG for build.sh

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Commits on Mar 2, 2024

• add function to move manifests from ghcr to quay.io

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• don't use "latest"

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• re-enable tests

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• back to podman

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• fix path

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• fix path

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• still need to clone repo for versions.sh

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• now try moving from ghcr to quay

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• login to quay

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• use right creds

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• re-enable orig tests

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Commits on Mar 17, 2024

• Merge branch 'master' into simplify-unify-containers

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Commits on Mar 19, 2024

• Merge branch 'master' into simplify-unify-containers

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Commits on Aug 10, 2024

• A round of comments and documentation

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• Merge branch 'master' into simplify-unify-containers

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Commits on Aug 11, 2024

• fix image tag

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• temporarily disable full tests

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• first try at enabling docker tests for just-built containers

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• consider env var for build image

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• use utils, not recipes, for test

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• rm mamba from images

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• bump version to trigger container build

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• be more clear about passing image name to mulled

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• Revert "rm mamba from images"

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• try reverting truststore removal

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Commits on Aug 12, 2024

• another attempt at removing mamba

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• use new name for image sent to mulled

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Commits on Aug 13, 2024

• use matched branch on bioconda-common

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