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Validator for Biothings Studio Plugin #382

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@jal347 jal347 commented Jan 30, 2025

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jal347 added 30 commits October 25, 2024 15:08
@jal347
test get mapping pydantic model
1d5610b
@jal347
try to log mapping
6596ef7
@jal347
add logging
0ecb4e2
@jal347
add logging setup to source
e9c20ec
@jal347
test if model_schema is formatted correctly
7a1d65a
@jal347
test if model_schema is formatted correctly
df7e82c
@jal347
test mongo query with pydantic
a36e77a
@jal347
test source endpoint to run validation through uploader
28af0f6
@jal347
test source endpoint using uploader manager
04a0ed2
@jal347
test model validation
a7e2e6f
@jal347
added optional to pydantic field mapping
254ef0a
@jal347
fixed optional pydantic field mapping
5a60db7
@jal347
implemented job manager with validating sources
8be300f
@jal347
added partial to submit to job manager
86cf9e9
@jal347
test defer to process
9b3ef26
@jal347
commented out motor import
83d60f6
@jal347
moved validate_src to basesourceuploader to attempt to pickle data
ab01d03
@jal347
prepare before unpreparing
b22427b
@jal347
test if removing validation model fixes pickling issue
43d76e2
@jal347
attempted fix at pickling objects
de7f890
@jal347
set model to none to attempt to make it picklable
e2d70be
@jal347
move getting the mapping to uploader
e2c5090
@jal347
added more loggers
63298df
@jal347
print the uploader_manager
b123141
@jal347
print the uploader_manager
c85db25
@jal347
print the uploader_manager
d6dc300
@jal347
test creating model with defer to process
79a8524
@jal347
fixed logging
2eb2c5f
@jal347
purposely fail doc
5cde456
@jal347
added test_api to default comfig
a3b7f1b
jal347 added 25 commits December 20, 2024 15:49
@jal347
make validation model listing more concise
589368c
@jal347
fixed reference from source manager to upload manager
5f6aacf
@jal347
monitor validation status
e0e9cc2
@jal347
added validation to sources
67d310c
@jal347
fixed saving pydantic model for uploaders with subsrcs
9a25e6f
@jal347
testing the try catch
11d9a5d
@jal347
trying to raise error as soon as we see it
d386189
@jal347
remove got error to see what happens
6fe11f9
@jal347
moved job outside of try
cb6f57d
@jal347
put whole method validate_src into try except
95a3e6b
@jal347
put in correct subkey for failed validation
0169107
@jal347
put in correct subkey for failed validation
502484d
@jal347
fixed validator helper
d174909
@jal347
dont split subsrc create_instance does it for you
c70a7da
@jal347
fixed validator recursion
c67f407
@jal347
test getting the module class klass
6cd612b
@jal347
test validate configuration
dd05039
@jal347
added more logging to test new validation config
51699a7
@jal347
cleanup uploader file
face516
@jal347
removed generate model param from uploader.py
992734f
@jal347
moved getting the model path in validate to validate_src so we can ad…
c265250 
…d it into the register status
@jal347
added model file used for all register status for validate
ba52eb1
@jal347
added model_file to validate in sumup_source
9df103e
@jal347
cleaned up create_pydantic_model recursion
a3ed8ed
@jal347
fixed key generator to handle multiple type values
5f2e815
@jal347 jal347 changed the title Save pydantic model Validator for Biothings Studio Plugin Jan 30, 2025
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