C++-based NGS Pipeline wrapper for WES and RNA-Seq created for the Qatar Biomedical Research Institute. This project produces two executables when compiled - qbri-wes and qbri-rna.
An overview of the pipeline can be found in the pdf documents.
N.B. New installations will require a config.h file creating prior to installation. To do so you should copy config.h.bak to config.h, then edit this new file to set the variables to suit your specific system. However, please note that PICARDMEM should not exceed 30GB.