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Analysis of mdscs in cancer patients treated with ibrutinib

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Single Cell RNA Seq Data Analysis For: A pilot study of the Bruton's tyrosine kinase inhibitor ibrutinib in combination with nivolumab in patients with metastatic solid tumors

  • The source data for this analysis will be available at the time of publication as a pre-compiled R package at this DOI: doi:10.5061/dryad.1c59zw3vs

  • Prior to publication, peer reviewers may access the data via the private URL provided in the manuscript.

  • The best plan is to clone the analysis project and then download the data package and install interactively via the RStudio packages tab. This should install the package "lazyData" as a dependency. This allows pseudo-lazy loading for packages that exceed the built-in file size limits in R. Within the analysis project run:

lazyData::requireData("carson.ibr.trial.datapkg")
  • The data objects should be available within a hidden environment and will occupy memory only when called by the analysis code.

  • Data pre-processing scripts are available in the data-raw directory of the data package.

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Analysis of mdscs in cancer patients treated with ibrutinib

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