reformatted black and changed github action to exclude version.py

bokulich-lab · Jan 4, 2024 · b611690 · b611690
1 parent 76a4a92
commit b611690
Show file tree

Hide file tree

Showing 3 changed files with 4 additions and 3 deletions.
diff --git a/.github/workflows/black.yaml b/.github/workflows/black.yaml
@@ -10,3 +10,7 @@ jobs:
       - uses: psf/black@stable
         with:
           version: "23.12.1"
+      - name: Lint with pre-commit pattern
+        run: |
+          find . -name "*.py" | grep -E '^((?!_version).)*\.py$' | xargs black --check
+        shell: bash
diff --git a/q2_amr/tests/card/test_mags.py b/q2_amr/tests/card/test_mags.py
@@ -50,7 +50,6 @@ def return_count_table(self, df_list):
         return count_table
 
     def test_annotate_mags_card(self):
-
         manifest = self.get_data_path("MANIFEST_mags")
         mag = MultiMAGSequencesDirFmt()
         card_db = CARDDatabaseFormat()

diff --git a/q2_amr/tests/card/test_reads.py b/q2_amr/tests/card/test_reads.py
@@ -88,7 +88,6 @@ def annotate_reads_card_test_body(self, read_type):
         ), patch("q2_amr.card.reads.read_in_txt", mock_read_in_txt), patch(
             "q2_amr.card.reads.create_count_table", mock_create_count_table
         ):
-
             # Run annotate_reads_card function
             result = annotate_reads_card(reads, card_db)
 
@@ -281,7 +280,6 @@ def test_visualize_annotation_stats(self):
             "q2_amr.card.reads.plot_sample_stats",
             side_effect=self.mock_plot_sample_stats,
         ), tempfile.TemporaryDirectory() as tmp:
-
             # Run visualize_annotation_stats function
             visualize_annotation_stats(tmp, amr_reads_annotation)