⬆️ update dependencies

bowang-lab · Sep 14, 2023 · f49de91 · f49de91
1 parent 6840642
commit f49de91
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Showing 3 changed files with 93 additions and 7 deletions.
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -9,7 +9,7 @@ homepage = "https://github.com/bowang-lab/scGPT"
 readme = "README.md"
 
 [tool.poetry.dependencies]
-python = ">=3.7.13,<4"
+python = ">=3.7.13,<3.11"
 pandas = "1.3.5"
 scvi-tools = "^0.16.0"
 llvmlite = "^0.38.0"
@@ -25,6 +25,7 @@ datasets = "^2.3.0"
 typing-extensions = "^4.2.0"
 scib = "^1.0.3"
 flash-attn = "^1.0.1"
+orbax = "<0.1.8"
 
 [tool.poetry.dev-dependencies]
 pytest = "^5.2"

diff --git a/scgpt/scbank/databank.py b/scgpt/scbank/databank.py
@@ -8,7 +8,6 @@
 from scipy.sparse import spmatrix, csr_matrix
 from anndata import AnnData
 from datasets import Dataset, load_dataset
-from scvi import settings
 
 from scgpt.tokenizer import GeneVocab
 from .data import DataTable, MetaInfo