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Merge remote-tracking branch 'origin/master' into pankbase-main #847

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merged 4 commits into from
Feb 3, 2025

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a-shilin
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@a-shilin a-shilin commented Feb 3, 2025

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dkjang and others added 4 commits January 28, 2025 13:58
updates for Vision Genomics kp
* Delete vue.config.A2FKP.js

* Create vue.config.radiant.js

* Create GnomInfoCard.vue

* Create TranscriptConsequenceTable.vue

* Create VariantPhenotypeTable.vue

* Create VariantSearch.vue

* Create main.js

* Create store.js

* Create Template.vue

* Create main.js

* Create store.js

* Create Template.vue

* Create main.js

* Create store.js

* Create Template.vue

* Update bioIndexUtils.js

* Update Template.vue

* Update Template.vue

* Update main.js

* Update store.js

* Update VariantSearch.vue

* Create SiteQualityMetricsTabs.vue

* Create QualityMatricsPlot.vue

* Create GenotypeQualityMetricsTabs.vue

* Create AllGenoQualityMetricsTabs.vue

* Update GeneAssociationsMasks.vue

* Update bioIndex.js

* Update main.js

* Update store.js

* Update Template.vue

* Update store.js

* Update Template.vue

* Update bioIndexUtils.js

* output folder

* Update VariantSearch.vue

* Update bioIndexUtils.js

---------

Co-authored-by: Quy <[email protected]>
* updates for Vision Genomics kp

* BYOR region track updated
* starting component

* further buildout of components

* fixing v-key errors

* Single Cell Browser component(s)

* adding hover labels to umap buttons and 'colo by' labels

* add umap tooltip for zoom/pan

* data cleanup fix

* starting select component for single cell browser color picker

* cfde citation formatting

* adding support for query string params

* adding layouts + more

* single cell plot updates

* major refactor. moved all SC components to own folder. separated data and layout logic. updated plots. new shader based umap

* cell browser optimizations

* adding gene search err, and gene loading indicator

* adding support for gene stats from marker_genes api

* small tweak

* cleaning up selector component, created mouse tooltip component

* mouseTooltip service

* umap color data optimization

* umap data optimizations, scrollTo fix

* change expression color scale, select list scrollTo fix, update marker genes to not expect z_scores
@a-shilin a-shilin merged commit 3660d18 into pankbase-main Feb 3, 2025
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3 participants