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Update ondemand #4

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tkphd and others added 30 commits June 23, 2022 17:15
@tkphd
Revert "Merge pull request carpentries-incubator#410 from carpentries…
450fc54 
…-incubator/revert-407-amdahl-code"

This reverts commit bdf8529, reversing
changes made to 86229eb.
@tkphd
Revert "Merge pull request carpentries-incubator#410 from carpentries…
11ad96c 
…-incubator/revert-407-amdahl-code"

This reverts commit bdf8529, reversing
changes made to 86229eb.
@tkphd
Substitute Amdahl tarball for lesson files
8a6f91b
@tkphd
Merge branch 'amdahl-code-redux' of github:tkphd/hpc-intro into amdah…
5403b6a 
…l-code-redux
@tkphd
pip install amdahl in parallel episode
2309e99
@tkphd
fix missing blockquote tags
971442d
@tkphd
see amdahl not cpi in history
64e034a
@tkphd
update Python version
0eb4195
@tkphd
updated server name
fb93453
@tkphd
a few readability fixes
115f82d
@tkphd
remove unused tarball, consolidate pi code in new tarball
decb121
@tkphd @ocaisa
Ask learners to think about why a transfer may not work
2155be8 
Co-authored-by: ocaisa <[email protected]>
@tkphd @ocaisa
Expand on the remote_destination for scp
b2baaa7 
Co-authored-by: ocaisa <[email protected]>
@tkphd @ocaisa
Clarify that remote_path may not exist
44dee4f 
Co-authored-by: ocaisa <[email protected]>
@tkphd
discuss the tarball before transferring it
4e305be
@tkphd
Merge branch 'amdahl-code-redux' of github:tkphd/hpc-intro into amdah…
11c0f81 
…l-code-redux
@tkphd @ocaisa
Ask learners to think about why a transfer may not work
de82b5d 
Co-authored-by: ocaisa <[email protected]>
@tkphd @ocaisa
Expand on the remote_destination for scp
4181a65 
Co-authored-by: ocaisa <[email protected]>
@tkphd @ocaisa
Clarify that remote_path may not exist
5eafc00 
Co-authored-by: ocaisa <[email protected]>
@tkphd
remove unused tarball, consolidate pi code in new tarball
2851268
@tkphd
discuss the tarball before transferring it
fac84f2
@tkphd
Merge branch 'amdahl-bad-merge' into amdahl-code-redux
1d489ba
@tkphd
clean up & clarify a thing or two
7dfc411
@tkphd
revised discussion of tar and scp flags & fields
7b9c78e
@tkphd
use nano to edit bashrc
9b656ad
@tkphd
substitute previously-seen example job ID
470c4c5
@tkphd
resolve build failure
62fd20d
@ocaisa
Update _episodes/16-parallel.md
160e626
@ocaisa
Merge pull request carpentries-incubator#411 from tkphd/amdahl-code-r…
3117db8 
…edux

Amdahl code, redux
@eckhrd
Update 13-scheduler.md
f63f2ca 
The HISAT2 website was moved to a new place.
ocaisa and others added 30 commits January 27, 2024 01:02
@ocaisa
Fix linting again
29e5aa1
@ocaisa
Some tweaks
0416de9
@ocaisa
Further tweaks
7ab14d5
@ocaisa
Make sure environment variables are not referenced before we cover them
e91145b
@tkphd
Update snippet lib episode lists
198e575
@tkphd
Teeny little typo
5f272f8
@tkphd
Merge pull request carpentries-incubator#446 from ocaisa/runtime_env
fd61fb6 
Add episode on environment variables
@heatherkellyucl @dpshelio
Create filezilla-remote-instructions.snip
d275660
@cdkharris
Reference a site snippet for Filezilla in the transferring-files lesson
561becf
@cdkharris
Untangle comments about rsync on directories
bd6a82c
@cdkharris
Removing a redundant comment about scp -r
ac2a996
@reid-a
Merge pull request carpentries-incubator#454 from UCL-ARC/rsync
61c0cb3 
Rsync's behavior when uploading a directory
@cdkharris
fix markdown and relocate UCL snippet
2c447a6
@cdkharris
New snippet files for using Fliezilla with SSH tunnels
c3b35c1
@cdkharris
Merge branch 'gh-pages' into filezilla
14cd11e
@reid-a
Merge pull request carpentries-incubator#453 from UCL-ARC/filezilla
20aa87c 
Filezilla remote tunneling instructions
@ocaisa
Add -L option to curl command
b47837d 
Fixes carpentries-incubator#455
@ocaisa
Try again
dfa22e6
@ocaisa
Lint
ff7e430
@ocaisa
Whoops
0a7320a
@reid-a
Merge pull request carpentries-incubator#456 from carpentries-incubat…
6fef636 
…or/ocaisa-patch-1

Add `-L` option to `curl` command
@cdkharris
Update login and compute node
2eb4a6e
@cdkharris
Update new python scripts with Myriad env setup
a209d45
@cdkharris
Update option flags for Myriad SGE
c7b43fc
@reid-a
Merge pull request carpentries-incubator#458 from UCL-ARC/cdkharris/U…
39981f1 
…CL-update-site-snippets

Update UCL site snippets
@jennyfothergill
Merge branch 'gh-pages' of https://github.com/carpentries-incubator/h…
aff84ce 
…pc-intro into update/ondemand
@jennyfothergill
Merging changes to allow tutorial to build locally
9ace241
@jennyfothergill
Update to match Borah output
bbd81ed
@jennyfothergill
Show using module avail with argument
5703385
@jennyfothergill
Remove login node comparison
08833dc
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8 participants
@jennyfothergill @tkphd @ocaisa @eckhrd @mbareford @heatherkellyucl @cdkharris @reid-a