Add new CTF Synodos study

public/schw_ctf_synodos_2025/case_lists/case-list.txt

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+cancer_study_identifier: schw_ctf_synodos_2025
+stable_id: schw_ctf_synodos_2025_sequenced
+case_list_name: Samples with mutation data from sequencing
+case_list_description: Samples with mutation data from sequencing (40)
+case_list_ids: swn_patient_1_tumor_8	swn_patient_54_tumor_135	swn_patient_28_tumor_65	swn_patient_28_tumor_62	swn_patient_10_tumor_108	swn_patient_1_tumor_11	swn_patient_64_tumor_125	swn_patient_23_tumor_46	swn_patient_2_tumor_13	swn_patient_31_tumor_70	swn_patient_2_tumor_12	swn_patient_39_tumor_6	swn_patient_7_tumor_16	swn_patient_32_tumor_74	swn_patient_38_tumor_90	swn_patient_33_tumor_94	swn_patient_25_tumor_56	swn_patient_32_tumor_75	swn_patient_38_tumor_89	swn_patient_6_tumor_15	swn_patient_4_tumor_28	swn_patient_59_tumor_136	swn_patient_28_tumor_63	swn_patient_28_tumor_64	swn_patient_10_tumor_109	swn_patient_1_tumor_9	swn_patient_10_tumor_110	swn_patient_11_tumor_25	swn_patient_23_tumor_47	swn_patient_10_tumor_112	swn_patient_27_tumor_87	swn_patient_10_tumor_111	swn_patient_27_tumor_88	swn_patient_21_tumor_53	swn_patient_11_tumor_26	swn_patient_64_tumor_121	swn_patient_8_tumor_21	swn_patient_63_tumor_123	swn_patient_1_tumor_10	swn_patient_39_tumor_95

public/schw_ctf_synodos_2025/data_clinical_patient.txt

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+#DIAGNOSIS	PATIENT_ID	SEX
+#Diagnosis of the patient	Patient ID	Sex of the patient
+#STRING	STRING	STRING
+#1	1	1
+DIAGNOSIS	PATIENT_ID	SEX
+Schwannomatosis	swn_patient_38	Male
+Schwannomatosis	swn_patient_10	Female
+Schwannomatosis	swn_patient_54	Male
+Schwannomatosis	swn_patient_52	Male
+Schwannomatosis	swn_patient_55	Male
+Schwannomatosis	swn_patient_51	Female
+Schwannomatosis	swn_patient_64	Male
+Schwannomatosis	swn_patient_3	Male
+Schwannomatosis	swn_patient_59	Male
+Schwannomatosis	swn_patient_62	Female
+Schwannomatosis	swn_patient_63	Male
+Schwannomatosis	swn_patient_60	Female
+Schwannomatosis	swn_patient_17	Female
+Schwannomatosis	swn_patient_19	Male
+Schwannomatosis	swn_patient_11	Female
+Schwannomatosis	swn_patient_1	Male
+Schwannomatosis	swn_patient_21	Male
+Schwannomatosis	swn_patient_23	Male
+Schwannomatosis	swn_patient_25	Female
+Schwannomatosis	swn_patient_27	Female
+Schwannomatosis	swn_patient_28	Female
+Schwannomatosis	swn_patient_2	Female
+Schwannomatosis	swn_patient_32	Female
+Schwannomatosis	swn_patient_31	Male
+Schwannomatosis	swn_patient_33	Male
+Schwannomatosis	swn_patient_39	Male
+Schwannomatosis	swn_patient_4	Male
+Schwannomatosis	swn_patient_6	Female
+Schwannomatosis	swn_patient_7	Male
+Schwannomatosis	swn_patient_8	Female

public/schw_ctf_synodos_2025/data_clinical_sample.txt

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+#PATIENT_ID	TISSUE_SITE	SAMPLE_ID	TUMOR	SOMATIC_STATUS
+#Patient ID	Site of tissue collection	Sample ID	Tumor type	Somatic Status
+#STRING	STRING	STRING	STRING	STRING
+#1	1	1	1	1
+PATIENT_ID	TISSUE_SITE	SAMPLE_ID	TUMOR	SOMATIC_STATUS
+swn_patient_38	nerves	swn_patient_38_tumor_89	Schwannoma	Matched
+swn_patient_10	nerves	swn_patient_10_tumor_111	Schwannoma	Matched
+swn_patient_10	nerves	swn_patient_10_tumor_112	Schwannoma	Matched
+swn_patient_54	nerves	swn_patient_54_tumor_135	Schwannoma	Matched
+swn_patient_52	nerves	swn_patient_52_tumor_119	Schwannoma	
+swn_patient_55	nerves	swn_patient_55_tumor_122	Schwannoma	
+swn_patient_51	nerves	swn_patient_51_tumor_4	Schwannoma	
+swn_patient_51	nerves	swn_patient_51_tumor_1	Schwannoma	
+swn_patient_55	nerves	swn_patient_55_tumor_118	Schwannoma	
+swn_patient_64	nerves	swn_patient_64_tumor_125	Schwannoma	Matched
+swn_patient_3	nerves	swn_patient_3_tumor_32	Schwannoma	
+swn_patient_10	nerves	swn_patient_10_tumor_110	Schwannoma	Matched
+swn_patient_51	nerves	swn_patient_51_tumor_2	Schwannoma	
+swn_patient_38	nerves	swn_patient_38_tumor_90	Schwannoma	Matched
+swn_patient_10	nerves	swn_patient_10_tumor_109	Schwannoma	Matched
+swn_patient_59	nerves	swn_patient_59_tumor_136	Schwannoma	Matched
+swn_patient_62	nerves	swn_patient_62_tumor_120	Schwannoma	
+swn_patient_63	nerves	swn_patient_63_tumor_123	Schwannoma	Matched
+swn_patient_51	nerves	swn_patient_51_tumor_3	Schwannoma	
+swn_patient_60	nerves	swn_patient_60_tumor_5	Schwannoma	
+swn_patient_17	nerves	swn_patient_17_tumor_31	Schwannoma	
+swn_patient_19	nerves	swn_patient_19_tumor_29	Schwannoma	
+swn_patient_10	nerves	swn_patient_10_tumor_108	Schwannoma	Matched
+swn_patient_11	nerves	swn_patient_11_tumor_25	Schwannoma	Matched
+swn_patient_11	nerves	swn_patient_11_tumor_26	Schwannoma	Matched
+swn_patient_1	nerves	swn_patient_1_tumor_10	Schwannoma	Matched
+swn_patient_1	nerves	swn_patient_1_tumor_9	Schwannoma	Matched
+swn_patient_1	nerves	swn_patient_1_tumor_8	Schwannoma	Matched
+swn_patient_1	nerves	swn_patient_1_tumor_11	Schwannoma	Matched
+swn_patient_21	nerves	swn_patient_21_tumor_53	Schwannoma	Matched
+swn_patient_23	nerves	swn_patient_23_tumor_46	Schwannoma	Matched
+swn_patient_23	nerves	swn_patient_23_tumor_47	Schwannoma	Matched
+swn_patient_25	nerves	swn_patient_25_tumor_56	Schwannoma	Matched
+swn_patient_27	nerves	swn_patient_27_tumor_87	Schwannoma	Matched
+swn_patient_27	nerves	swn_patient_27_tumor_88	Schwannoma	Matched
+swn_patient_28	nerves	swn_patient_28_tumor_63	Schwannoma	Matched
+swn_patient_28	nerves	swn_patient_28_tumor_64	Schwannoma	Matched
+swn_patient_28	nerves	swn_patient_28_tumor_62	Schwannoma	Matched
+swn_patient_28	nerves	swn_patient_28_tumor_65	Schwannoma	Matched
+swn_patient_2	nerves	swn_patient_2_tumor_12	Schwannoma	Matched
+swn_patient_32	nerves	swn_patient_32_tumor_75	Schwannoma	Matched
+swn_patient_31	nerves	swn_patient_31_tumor_70	Schwannoma	Matched
+swn_patient_2	nerves	swn_patient_2_tumor_13	Schwannoma	Matched
+swn_patient_32	nerves	swn_patient_32_tumor_74	Schwannoma	Matched
+swn_patient_33	nerves	swn_patient_33_tumor_94	Schwannoma	Matched
+swn_patient_39	nerves	swn_patient_39_tumor_6	Schwannoma	Matched
+swn_patient_39	nerves	swn_patient_39_tumor_95	Schwannoma	Matched
+swn_patient_4	nerves	swn_patient_4_tumor_28	Schwannoma	Matched
+swn_patient_64	nerves	swn_patient_64_tumor_121	Schwannoma	Matched
+swn_patient_6	nerves	swn_patient_6_tumor_15	Schwannoma	Matched
+swn_patient_7	nerves	swn_patient_7_tumor_16	Schwannoma	Matched
+swn_patient_8	nerves	swn_patient_8_tumor_21	Schwannoma	Matched