Update HIVdb from version 9.4 to 9.8 #1444
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Fixes #1407 Changes made: - Downloaded and integrated HIVdb 9.8 XML (dated 2025-01-05) from Stanford - Updated resistance.py to use HIVDB_9.8.xml algorithm file - Updated genreport.yaml with new version 9.8 and date 2025-01-05 - Added DPV (dapirivine) NNRTI drug to genreport.yaml and test expectations - Updated all test files (test_resistance.py, test_asi_algorithm.py) for version 9.8 - Fixed drug name spelling from 'dapivirine' to 'dapirivine' per HIVdb XML - Removed obsolete HIVDB_9.0.xml and HIVDB_9.4.xml files - Added comprehensive update guide in docs/contrib.md - Created automation script update_hivdb.py for future updates - Verified pyvdrm v0.3.2 compatibility with HIVdb 9.8 All tests pass: - 86 tests in micall/tests/test_resistance.py - 28 tests in micall/tests/test_asi_algorithm.py - 15 tests in micall/tests/test_genreport.py Note: CA region (Capsid) drug LEN was intentionally excluded as CA is not included in get_algorithm_regions() per previous implementation.
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Fixes #1407
Changes made:
Note: CA region (Capsid) drug LEN was intentionally excluded as CA is not included in get_algorithm_regions() per previous implementation.