API method changes in EnsemblDb3

method
changeset	old_name	new_name	summary	file
10:c591d53fd46c	GeneralRelease	general_release	getTableRowCount and GeneralRelease	ensembldb/genome.py
10:c591d53fd46c	getTablesRowCount	get_tables_row_count	getTableRowCount and GeneralRelease	ensembldb/database.py
11:76f8563831f3	makeLocation	make_location	makeLocation to make_location	ensembldb/genome.py
12:4e00cd29da9f	getGeneByStableId	get_gene_by_stableid	get_gene_by_stableid to get_gene_by_stableid	ensembldb/genome.py
13:46319243f1e5	getGenesMatching	get_genes_matching	getGenesMatching to get_genes_matching	ensembldb/genome.py
14:f989bef505a1	getTranscriptByStableId	get_transcript_by_stableid	getTranscriptByStableId to get_transcript_by_stableid	ensembldb/genome.py
15:8c9210c48215	getEstMatching	get_est_matching	getEstMatching to get_est_matching	ensembldb/genome.py
16:1d8e15195cd1	getFeatures	get_features	getFeatures to get_features	many files..
18:3d69efa97f94	getVariation	get_variation	getVariation to get_variation	ensembldb/genome.py
19:ec24eabfd8b2	getRegion	get_region	getRegion to get_region	ensembldb/genome.py
21:271079f2aa75	featureData	feature_data	fixed compara test	ensembldb/region.py
22:779385a2b321	getEnsemblDbPrefix	get_ensembl_db_prefix	multiple changes across the code base for pep8 compliance	ensembldb/species.py
22:779385a2b321	PhaseEnd	phase_end	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getSpeciesNames	get_species_names	multiple changes across the code base for pep8 compliance	ensembldb/species.py
22:779385a2b321	PhaseStart	phase_start	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getLongestCdsTranscript	get_longest_cds_transcript	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getMember	get_member	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getSpeciesName	get_species_name	multiple changes across the code base for pep8 compliance	ensembldb/species.py
22:779385a2b321	getCdsLengths	get_cds_lengths	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	subFeatureData	sub_feature_data	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getCommonName	get_common_name	multiple changes across the code base for pep8 compliance	ensembldb/species.py
22:779385a2b321	amendSpecies	amend_species	multiple changes across the code base for pep8 compliance	ensembldb/species.py
22:779385a2b321	getAnnotatedSeq	get_annotated_seq	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getMaxCdsLengths	get_max_cds_lengths	multiple changes across the code base for pep8 compliance	ensembldb/related_region.py
22:779385a2b321	getAnnotatedAligned	get_annotated_aligned	multiple changes across the code base for pep8 compliance	ensembldb/related_region.py
22:779385a2b321	getComparaName	get_compara_name	multiple changes across the code base for pep8 compliance	ensembldb/species.py
22:779385a2b321	getCdsLength	get_cds_length	multiple changes across the code base for pep8 compliance	ensembldb/region.py
22:779385a2b321	getSpeciesSet	get_species_set	multiple changes across the code base for pep8 compliance	ensembldb/related_region.py
22:779385a2b321	makeRelativeTo	make_relative_to	multiple changes across the code base for pep8 compliance	ensembldb/assembly.py
22:779385a2b321	getSeqCollection	get_seq_collection	multiple changes across the code base for pep8 compliance	ensembldb/related_region.py
5:c1fd4946eefe	getRelatedGenes	get_related_genes	getRelatedGenes to get_related_genes	ensembldb/compara.py
6:761b5f3200ec	getSyntenicRegions	get_syntenic_regions	getSyntenicRegions to get_syntenic_regions	ensembldb/compara.py
7:d5ce1f1e97e8	getDistinct	get_distinct	getDistinct to get_distinct	many files..
8:232aad3b5795	getTable	get_table	getTable to get_table	ensembldb/database.py
9:4bbf6a0837ce	tableHasColumn	table_has_column	tableHasColumn to table_has_column	ensembldb/database.py