Skip to content

Conversation

@Walde1nsamkeit
Copy link
Contributor

@Walde1nsamkeit Walde1nsamkeit commented Oct 30, 2025

Updated lineage notes to include branch information for XFG sublineages.
Updated donor information of XGA.
Updated breakpoint information of XGC.

Updated lineage notes to include branch information for specific lineages.
@Walde1nsamkeit
Copy link
Contributor Author

While XGC shares C16887T and C29762T with the XFG.4> C16887T, C29762T branch, the 3' ending should not be from PY.2, and it should only have 1 breakpoint. N:I379Trev is also a convergent mutation.

@AngieHinrichs
Copy link
Member

@corneliusroemer do you agree with @Walde1nsamkeit's assessment of the breakpoints / 3' end?

@Walde1nsamkeit Walde1nsamkeit changed the title Update lineage_notes.txt Update lineage_notes.txt and alias_key.json Nov 1, 2025
@Walde1nsamkeit
Copy link
Contributor Author

The XFJ.4* donor of XGA is already designated as XFJ.4.1 so I updated

@Walde1nsamkeit Walde1nsamkeit marked this pull request as ready for review November 3, 2025 12:40
@AngieHinrichs AngieHinrichs merged commit 1458425 into cov-lineages:master Nov 4, 2025
5 checks passed
@AngieHinrichs
Copy link
Member

Thanks @Walde1nsamkeit!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants