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pango-designation v1.14

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@chrisruis chrisruis released this 19 Aug 16:06
· 3580 commits to master since this release
v1.14
cd17027
  • Added lineage BA.2.75.1 from #856 with 42 new sequence designations, and 2 updated designations from BA.2.75
  • Added new lineage BA.2.10.4 from #898 with 7 new sequence designations
  • Added new lineage BJ.1 from #915 with 6 new sequence designations
  • Added new lineage BA.2.38.3 from #840 with 27 new sequence designations, and 0 updated designations
  • Added new lineage BA.2.75.2 from #963 with 10 new designations
  • Added new lineage BA.2.76.1 from #899 with 18 new sequence designations
  • Added new lineage BA.2.76.2 from #939 with 26 new designations
  • Added new lineage BA.2.9.6 from #671 with 410 new sequence designations, and 1 updated designation from BA.2
  • Added new lineage BA.5.1.10 from #901 with 910 new sequence designations, and 203 updated designations from BA.5.1
  • Added new lineage BA.5.1.11 from #908 with 327 new designations and 47 updated from BA.5.1
  • Added new lineage BA.5.1.9 from #786 with 161 new sequence designations, and 52 updated designations from BA.5.1
  • Added new lineage BA.5.10 from #936 with 37 new sequence designations, and 3 updated designations from BA.5
  • Added new lineage BA.5.5.1 from #873 with 93 new sequence designations, and 0 updated designations
  • Added new lineage BA.5.6.2 from #903 with 45 new sequence designations, and 24 updated designations from BA.5.6
  • Added new lineage BF.13 from #883 with 29 new sequence designations, and 7 updated designations from BA.5.2.1
  • Added new lineage BE.1.2 from #923 with 41 new sequence designations
  • Added new lineage BF.14 from #843 with 36 new designations and 24 updated from BA.5.2.1
  • Added new lineage BG.6 from #836 with 36 new sequence designations and 5 updated from BA.2.12.1
  • Added new lineage BH.1 from #913 with 14 new sequence designations, and 1 updated designation from BA.2.38.3
  • Added new lineage BK.1 from #901 with 0 new sequence designations, and 93 updated designations from BA.5.1.10
  • Added new recombinant lineage XAQ from #798 with 74 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAR from #860 with 49 new sequence designations, and 0 updated designations
  • Duplicates resolved mostly by agreement between big tree placement and pangolin (usher mode) assignment, & manually where those disagree. Removed some sequences because they looked like mixtures or had too many reversions or run-of-bases substitutions.
  • Removed 3194 sequences from an odd branch in BA.1 (reversions and/or BA.2 mutations) with multiple mini-BA.1 sub-branches implying errors in sequences and/or tree-building.
  • Withdrew BA.2.36.1 from #874 and re-designated as BA.2.82
Assets 2
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