Feature/covbadge

.github/workflows/python-package-conda.yml

@@ -52,20 +52,28 @@ jobs:
         run: |
           source $CONDA/etc/profile.d/conda.sh
           conda activate env_hydrodiy
-          pytest --cov=hydrodiy --cov-config=.coveragerc --junitxml=junit/test-results.xml --cov-report=xml --cov-report=html src/hydrodiy
+          pytest --cov=hydrodiy --cov-report=xml --cov-report=html --cov-report=term-missing src/hydrodiy
 
-      - name: Upload pytest test results
-        uses: actions/upload-artifact@v3
+      - name: Parse coverage report and create badge
+        run: |
+          source $CONDA/etc/profile.d/conda.sh
+          conda activate env_hydrodiy
+          python -c "import xml.etree.ElementTree as ET; from anybadge import Badge; cov = float(ET.parse('coverage.xml').getroot().get('line-rate')) * 100; covbadge = Badge('Coverage', value=f'{cov:0.0f}%', thresholds={60:'red', 70:'orange', 80:'lightgreen', 90:'green'}); covbadge.write_badge('coverage_badge.svg', True)"
+
+      - name: Update gist badge
+        run: |
+          sed 's/\"/\\\"/g' coverage_badge.svg > coverage_badge.txt
+          echo "{\"files\": {\"coverage_badge.svg\": {\"content\": \"$(cat coverage_badge.txt)\"}}}" > coverage_badge.json
+          curl -X PATCH -H "Authorization: token ${{ secrets.COVERAGE_GIST_TOKEN }}" \
+                -d @coverage_badge.json \
+                "https://api.github.com/gists/${{ secrets.COVERAGE_GIST_ID }}"
+
+      - name: Upload coverage report
+        uses: actions/upload-artifact@v4
         with:
-          name: pytest-results
-          path: junit/test-results.xml
-
-        # Use always() to always run this step to publish test results when there are test failures
-        if: ${{ always() }}
+          name: pytest-coverage
+          path: htmlcov/*.* 
 
-      - name: Upload to codecov
-        uses: codecov/codecov-action@v3        
-
       - name: Run examples
         run: |
           source $CONDA/etc/profile.d/conda.sh

README.md

@@ -1,5 +1,8 @@
 # hydrodiy
-[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10065114.svg)](https://doi.org/10.5281/zenodo.10065114) [![CI](https://github.com/csiro-hydroinformatics/hydrodiy/actions/workflows/python-package-conda.yml/badge.svg)](https://github.com/csiro-hydroinformatics/hydrodiy/actions/workflows/python-package-conda.yml) [![codecov](https://codecov.io/gh/csiro-hydroinformatics/hydrodiy/graph/badge.svg?token=ARBFW69TI3)](https://codecov.io/gh/csiro-hydroinformatics/hydrodiy)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14460151.svg)](https://doi.org/10.5281/zenodo.14460151)
+[![CI](https://github.com/csiro-hydroinformatics/hydrodiy/actions/workflows/python-package-conda.yml/badge.svg)](https://github.com/csiro-hydroinformatics/hydrodiy/actions/workflows/python-package-conda.yml) 
+![Coverage](https://gist.githubusercontent.com/jlerat/47c5eaf5c4ac8375b92a548c057d5c24/raw/coverage_badge.svg)
+
 
 Python toolbox for hydrological data processing.
 

env_hydrodiy.yml

@@ -3,6 +3,7 @@ channels:
   - conda-forge
   - defaults
 dependencies:
+  - anybadge
   - cython=3.0.10
   - flake8=7.1.1
   - matplotlib=3.8.4