v1.0.1

Changes

• Bump the python-packages group with 5 updates (@dependabot[bot] via #275)
• Remove pyarrow dependency constraint and bump python version (@d33bs via #274)
• Bump pip from 25.2 to 25.3 in /docs/manuscripts/cosmicqc_paper_v1/figure_3 (@dependabot[bot] via #273)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #272)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #271)
• Add updated figures from the manuscript (@jenna-tomkinson via #267)
• Add preprint DOI metadata to project (@d33bs via #270)
• Bump the python-packages group with 5 updates (@dependabot[bot] via #269)
• Bump pyarrow from 12.0.1 to 14.0.1 in /docs/manuscripts/cosmicqc_paper_v1/figure_3 (@dependabot[bot] via #262)
• Fix test data generation and rerun example notebook (@d33bs via #266)
• Update clustering code (@jenna-tomkinson via #259)
• Add CODEOWNERS file (@d33bs via #261)

v1.0.0

Changes

• Bump the python-packages group across 1 directory with 7 updates (@dependabot[bot] via #264)
• Bump the python-packages group with 2 updates (@dependabot[bot] via #260)
• Bump the python-packages group with 6 updates (@dependabot[bot] via #258)
• Add manuscript figures (@jenna-tomkinson via #251)
• Bump dask from 2025.7.0 to 2025.9.0 in the python-packages group (@dependabot[bot] via #257)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #256)
• Bump actions/setup-python from 5 to 6 (@dependabot[bot] via #255)
• Bump the python-packages group with 4 updates (@dependabot[bot] via #252)
• Bump coverage from 7.10.4 to 7.10.5 in the python-packages group (@dependabot[bot] via #250)
• Fix blog link in readme (@d33bs via #247)
• Bump the python-packages group with 6 updates (@dependabot[bot] via #249)
• Bump the python-packages group with 4 updates (@dependabot[bot] via #245)
• Bump actions/checkout from 4 to 5 (@dependabot[bot] via #246)
• Fix nan inclusions for find_outliers (@d33bs via #244)
• Bump the python-packages group across 1 directory with 7 updates (@dependabot[bot] via #242)
• Enable Dependabot pre-commit updates (@d33bs via #240)
• Bump aiohttp from 3.10.11 to 3.12.14 (@dependabot[bot] via #239)
• Update for Python 3.13 compatibility (@d33bs via #231)
• Bump the python-packages group across 1 directory with 8 updates (@dependabot[bot] via #238)
• Bump the python-packages group with 5 updates (@dependabot[bot] via #236)
• Bump requests from 2.32.3 to 2.32.4 (@dependabot[bot] via #235)
• Add Almanack to pre-commit checks (@d33bs via #232)
• Fix init and add CD example notebook (@jenna-tomkinson via #233)
• Bump pytest from 8.4.0 to 8.4.1 in the python-packages group (@dependabot[bot] via #230)
• Bump protobuf from 5.28.0 to 5.29.5 (@dependabot[bot] via #229)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #228)
• Update project URL's for cytomining (@d33bs via #227)
• Bump the python-packages group with 2 updates (@dependabot[bot] via #226)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #225)
• Address CVE-2024-12797 (@d33bs via #224)

v0.1.5

Changes

• Bump the python-packages group across 1 directory with 10 updates (@dependabot[bot] via #222)
• Bump tornado from 6.4.2 to 6.5.1 (@dependabot[bot] via #223)
• Update tornado to address CVE-2025-47287 (@d33bs via #217)
• Update pre-commit-lite conditions (@d33bs via #214)
• Update GH Actions ubuntu version (@d33bs via #213)
• Add contamination detector class (@jenna-tomkinson via #216)
• Bump setuptools from 70.1.1 to 78.1.1 (@dependabot[bot] via #219)
• Bump the python-packages group across 1 directory with 7 updates (@dependabot[bot] via #215)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #211)
• Bump h11 from 0.14.0 to 0.16.0 (@dependabot[bot] via #209)
• Bump poethepoet from 0.33.1 to 0.34.0 in the python-packages group (@dependabot[bot] via #208)
• Bump ipywidgets from 8.1.5 to 8.1.6 in the python-packages group (@dependabot[bot] via #207)
• Bump selenium from 4.30.0 to 4.31.0 in the python-packages group (@dependabot[bot] via #206)
• Bump the python-packages group with 3 updates (@dependabot[bot] via #205)
• Bump the python-packages group across 1 directory with 6 updates (@dependabot[bot] via #204)
• Bump the python-packages group across 1 directory with 9 updates (@dependabot[bot] via #200)
• Bump cytotable from 0.0.12 to 0.0.13 in the python-packages group (@dependabot[bot] via #197)
• Require poetry-dynamic-versioning within pyproject.toml (@d33bs via #189)
• Update dependabot to group Python updates together (@d33bs via #188)
• Bump cytodataframe from 0.0.17 to 0.0.18 (@dependabot[bot] via #196)
• Bump coverage from 7.6.10 to 7.6.12 (@dependabot[bot] via #195)
• Bump pyarrow from 18.1.0 to 19.0.0 (@dependabot[bot] via #193)
• Bump jupytext from 1.16.6 to 1.16.7 (@dependabot[bot] via #192)
• Bump sqlalchemy from 2.0.37 to 2.0.38 (@dependabot[bot] via #191)
• Bump myst-nb from 1.1.2 to 1.2.0 (@dependabot[bot] via #190)
• Bump cytodataframe from 0.0.16 to 0.0.17 (@dependabot[bot] via #186)
• Bump jupyterlab from 4.3.4 to 4.3.5 (@dependabot[bot] via #185)
• Bump datashader from 0.16.3 to 0.17.0 (@dependabot[bot] via #184)
• Bump s3fs from 2024.12.0 to 2025.2.0 (@dependabot[bot] via #183)
• Bump black from 24.10.0 to 25.1.0 (@dependabot[bot] via #182)
• Add software DOI to repository (@d33bs via #181)
• Bump macos gh actions runner version (@d33bs via #180)

v0.1.4

Changes

• Bump pycytominer from 1.2.1 to 1.2.2 (@dependabot[bot] via #179)
• Bump selenium from 4.28.0 to 4.28.1 (@dependabot[bot] via #177)
• Bump poethepoet from 0.32.1 to 0.32.2 (@dependabot[bot] via #178)
• Bump isort from 5.13.2 to 6.0.0 (@dependabot[bot] via #176)
• Add blog post to readme (@d33bs via #174)
• Bump duckdb from 1.0.0 to 1.1.0 (@dependabot[bot] via #175)
• Bump selenium from 4.27.1 to 4.28.0 (@dependabot[bot] via #173)
• Bump sqlalchemy from 2.0.36 to 2.0.37 (@dependabot[bot] via #172)
• Bump poethepoet from 0.32.0 to 0.32.1 (@dependabot[bot] via #171)
• Bump cytodataframe from 0.0.15 to 0.0.16 (@dependabot[bot] via #170)

v0.1.3

Changes

• Remove unused report template (@d33bs via #168)
• Fix CytoDataFrame custom attributes in label_outliers (@d33bs via #166)
• Bump coverage from 7.6.9 to 7.6.10 (@dependabot via #164)
• Bump poethepoet from 0.31.1 to 0.32.0 (@dependabot via #163)
• Bump jinja2 from 3.1.4 to 3.1.5 (@dependabot via #162)
• Bump s3fs from 2024.10.0 to 2024.12.0 (@dependabot via #161)
• Bump pyarrow from 16.1.0 to 18.1.0 (@dependabot via #160)
• Bump jupyterlab from 4.3.3 to 4.3.4 (@dependabot via #159)
• Bump jupytext from 1.16.5 to 1.16.6 (@dependabot via #158)
• Bump jupyterlab from 4.3.2 to 4.3.3 (@dependabot via #157)
• Bump cytodataframe from 0.0.13 to 0.0.15 (@dependabot via #156)
• Bump jupytext from 1.16.4 to 1.16.5 (@dependabot via #155)
• Bump hvplot from 0.11.1 to 0.11.2 (@dependabot via #154)

v0.1.2

Changes

• Remove cytodataframe.show_report references (@d33bs via #153)
• Enhance find_outliers and identify_outliers performance by avoiding duplication and filtering columns (@d33bs via #140)
• Bump poethepoet from 0.30.0 to 0.31.1 (@dependabot via #151)
• Bump coverage from 7.6.8 to 7.6.9 (@dependabot via #150)
• Bump jupyterlab from 4.3.1 to 4.3.2 (@dependabot via #149)
• Add pre-commit CI lite for automated fixes (@d33bs via #132)
• Bump coverage from 7.6.4 to 7.6.8 (@dependabot via #147)
• Bump pytest from 8.3.3 to 8.3.4 (@dependabot via #148)
• Bump selenium from 4.26.1 to 4.27.1 (@dependabot via #145)
• Bump sqlalchemy from 1.4.54 to 2.0.36 (@dependabot via #144)
• Bump aiohttp from 3.10.5 to 3.10.11 (@dependabot via #143)
• Bump cryptography from 43.0.0 to 43.0.1 (@dependabot via #142)
• Bump tornado from 6.4.1 to 6.4.2 (@dependabot via #141)
• Bump umap-learn from 0.5.6 to 0.5.7 (@dependabot via #135)
• Bump cytotable from 0.0.10 to 0.0.12 (@dependabot via #136)
• Bump jupyterlab from 4.2.5 to 4.3.1 (@dependabot via #137)
• Bump dunamai from 1.22.0 to 1.23.0 (@dependabot via #138)
• Bump sphinx-wagtail-theme from 6.3.0 to 6.4.0 (@dependabot via #139)
• Documentation updates (CONTIBUTING.md link, redirector, and local build guidance) (@d33bs via #133)
• Bump myst-nb from 1.1.1 to 1.1.2 (@dependabot via #131)
• Bump pytest from 8.2.1 to 8.3.3 (@dependabot via #130)
• Bump poethepoet from 0.27.0 to 0.30.0 (@dependabot via #129)
• Bump coverage from 7.6.0 to 7.6.4 (@dependabot via #128)
• Bump selenium from 4.25.0 to 4.26.1 (@dependabot via #127)

v0.1.1

Changes

• Bump cytodataframe versions within lockfile (@d33bs via #126)

v0.1.0

Changes

• Enable updated versions of CytoDataFrame to be used (@d33bs via #125)
• Update ruff formatting to py310 (@d33bs via #123)
• Add CytoDataFrame dependency; remove migrated code (@d33bs via #121)
• Bump hvplot from 0.10.0 to 0.11.1 (@dependabot via #119)
• Bump jupyterlab-code-formatter from 2.2.1 to 3.0.2 (@dependabot via #118)
• Bump black from 24.4.2 to 24.10.0 (@dependabot via #117)
• Bump plotly from 5.22.0 to 5.24.1 (@dependabot via #116)
• Bump pyyaml from 6.0.1 to 6.0.2 (@dependabot via #115)
• Bump html2image from 2.0.4.3 to 2.0.5 (@dependabot via #114)
• Bump jupytext from 1.16.2 to 1.16.4 (@dependabot via #113)
• Bump s3fs from 2024.9.0 to 2024.10.0 (@dependabot via #112)
• Bump fire from 0.6.0 to 0.7.0 (@dependabot via #111)
• Bump selenium from 4.24.0 to 4.25.0 (@dependabot via #110)
• Enable Dependabot updates to Poetry lockfile (@d33bs via #109)
• Add presentation section to docsite (@d33bs via #106)
• Disable docs builds for dependabot (@d33bs via #105)
• Turn off automatic notebook execution for docs builds (@d33bs via #103)
• Format pyproject.toml file with pyproject-fmt using pre-commit (@d33bs via #102)
• Bump actions/setup-python from 4 to 5 (@dependabot via #100)
• Enable Dependabot updates for GitHub Actions (@d33bs via #99)
• Add poster content for 2024 SBI2 conference (@d33bs via #67)

v0.0.11

Changes

• Correct post build doctree removal path (@d33bs via #95)
• Reduce UMAP rendered notebook size and avoid docsite .doctree files for publishing (@d33bs via #94)
• Add example notebook with JUMP UMAP processing (@d33bs via #88)
• Add nuclear speckles data with tests (@d33bs via #84)
• Fix docs logo link and customize other links (@d33bs via #82)
• Add find_outliers percentage of total (@d33bs via #81)
• Bump jupyterlab from 4.2.3 to 4.2.5 (@dependabot via #80)
• Remove python 3.8 from tests (@d33bs via #78)
• Add docsite html for base path redirection (@d33bs via #74)
• Add docsite (@d33bs via #73)
• Add label and identify functions to init file (@jenna-tomkinson via #71)
• Update pull request template (@d33bs via #68)

v0.0.10

Changes

• Fix for nuclear speckle image display in CytoDataFrame (@d33bs via #64)