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write a 6-column BED instead of a 4-column one
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Diff for: hicexplorer/hicCorrectMatrix.py

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@@ -667,7 +667,7 @@ def main(args=None):
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with open(args.filteredBed, 'w') as f:
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for outlier_region in set(outlier_regions):
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interval = ma.cut_intervals[outlier_region]
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f.write('\t'.join(str(x) for x in interval) + '\n')
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f.write(f"{interval[0]}\t{interval[1]}\t{interval[2]}\t.\t{interval[3]}\t.\n")
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# mask filtered regions
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ma.maskBins(outlier_regions)
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total_filtered_out = set(outlier_regions)

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