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implement functionality to allow input selection or skipping of files #72

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yucongalicechen
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@yucongalicechen yucongalicechen commented May 23, 2024

Addressing issue #52

I went through the UCs and test cases in #48 and there left these cases (I addressed UC7 and -file7,chi in this PR and will probably address UC5 in another PR):

  1. UC5: multiple files, different samples (file1.chi 2.5 file2.chi 3.5)
  2. UC7: automatically selects the right files to apply the correction to (don't read _corrected and _cve).
  3. -file7.chi (specify files don't want to read).

For 2, I didn't add any additional test cases and put some corrected files in our tmp path.
For 3, since - would be taken as one of the arguments, I changed it to ~.

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sbillinge commented May 23, 2024 via email

@yucongalicechen yucongalicechen deleted the input_dir4 branch June 4, 2024 19:36
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