Re-cookiecut, move tests to root level

.github/workflows/check-news-item.yml

@@ -0,0 +1,12 @@
+name: Check for News
+
+on:
+  pull_request_target:
+    branches:
+    - main
+
+jobs:
+  build:
+    uses: Billingegroup/release-scripts/.github/workflows/_check-news-item.yml@v0
+    with:
+      project: diffpy.pdfgui

.github/workflows/matrix-and-codecov-on-merge-to-main.yml

@@ -0,0 +1,21 @@
+name: CI
+
+on:
+  push:
+    branches:
+      - main
+  release:
+    types:
+      - prereleased
+      - published
+  workflow_dispatch:
+
+jobs:
+  coverage:
+    uses: Billingegroup/release-scripts/.github/workflows/_matrix-and-codecov-on-merge-to-main.yml@v0
+    with:
+      project: diffpy.pdfgui
+      c_extension: false
+      headless: true
+    secrets:
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/publish-docs-on-release.yml

@@ -0,0 +1,14 @@
+name: Build and Deploy Docs
+
+on:
+  release:
+    types:
+      - published
+  workflow_dispatch:
+
+jobs:
+  docs:
+    uses: Billingegroup/release-scripts/.github/workflows/_publish-docs-on-release.yml@v0
+    with:
+      project: diffpy.pdfgui
+      c_extension: false

.github/workflows/tests-on-pr.yml

@@ -0,0 +1,16 @@
+name: Tests on PR
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  validate:
+    uses: Billingegroup/release-scripts/.github/workflows/_tests-on-pr.yml@v0
+    with:
+      project: diffpy.pdfgui
+      c_extension: false
+      headless: true

.pre-commit-config.yaml

@@ -16,7 +16,10 @@ repos:
       - id: check-yaml
       - id: end-of-file-fixer
       - id: trailing-whitespace
-        exclude: '\.(rst|txt)$'
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-toml
+      - id: check-added-large-files
   - repo: https://github.com/psf/black
     rev: 24.4.2
     hooks:

AUTHORS.rst

@@ -15,17 +15,17 @@ This code was developed as part of the DiffPy project to create python
 modules for structure investigations from diffraction data.  The main
 contributors to this package were
 
-    Chris Farrow, 
-    Jiwu Liu, 
-    Pavol Juhas, 
+    Chris Farrow,
+    Jiwu Liu,
+    Pavol Juhas,
     Dmitriy Bryndin
 
 Other current and former contributors of the DiffPy project include
 
-    Simon Billinge, 
-    Chris Farrow, 
-    Emil Bozin, 
-    Wenduo Zhou, 
+    Simon Billinge,
+    Chris Farrow,
+    Emil Bozin,
+    Wenduo Zhou,
     Peng Tian
 
 The DiffPy team is part of the Billinge Group at Columbia University in New York,

MANIFEST.in

@@ -1,21 +1,12 @@
-recursive-include src *
-recursive-include doc *
-recursive-exclude * __pycache__
-recursive-exclude * *.py[co]
-exclude doc/manual/images/*.pdf
-recursive-exclude doc/manual Makefile *.py *.texinfo
-recursive-exclude doc/manual *.aux *.cp *.cps *.err *.log *.toc *.vr *.vrs
-recursive-include icons *.png *.ico
-recursive-exclude icons *.m *.xcf
-global-exclude .gitattributes .gitignore .gitarchive.cfg
-global-exclude .DS_Store
+graft src
+graft tests
+graft requirements
 
-include AUTHORS.rst
-include LICENSE.rst
-include README.rst
-include requirements.txt
+include AUTHORS.rst LICENSE*.rst README.rst
 
-include diffpy.pdfgui/_version.py
-
-# If including data files in the package, add them like:
-# include path/to/data_file
+# Exclude all bytecode files and __pycache__ directories
+global-exclude *.py[cod]  # Exclude all .pyc, .pyo, and .pyd files.
+global-exclude .DS_Store  # Exclude Mac filesystem artifacts.
+global-exclude __pycache__  # Exclude Python cache directories.
+global-exclude .git*  # Exclude git files and directories.
+global-exclude .idea  # Exclude PyCharm project settings.