Some work about the scripts

vault/Master-Works.Edouard-Brülhart.Mass-spectrometry.md

@@ -2,10 +2,12 @@
 id: gt1q9bzu5eep82sxxog219k
 title: Mass spectrometry
 desc: ''
-updated: 1719413423132
+updated: 1719413749897
 created: 1718557586154
 ---
 
 Once aliquots are ready, they can be analyzed through mass spectrometry.
 
-To proceed, we created a software that permits both to create a mass spectrometry sample list and add mass spectrometry metadata to the database. This software, called [[Master-Works.Edouard-Brülhart.Services.MS-sample-list-creator]], takes as entry aliquots IDs and retrieves a CSV file containing the freshly created list.
+To proceed, we created a software that permits both to create a mass spectrometry sample list and add mass spectrometry metadata to the database. This software, called [[Master-Works.Edouard-Brülhart.Services.MS-sample-list-creator]], takes as entry aliquots IDs and retrieves a CSV file containing the freshly created list. The list can then be used to launch a mass spectrometry analyzis.
+
+During this process, some metadata as injection volume, MS file, injection method, date, etc. are collected and add in the database.

vault/Master-Works.Edouard-Brülhart.Scripts.Python.gpkg-creator.md

@@ -0,0 +1,12 @@
+---
+id: ozicr87gyzuelakrzrb92fc
+title: gpkg-creator
+desc: ''
+updated: 1719414572755
+created: 1719414008348
+---
+The gpkg-creator script permits to deploy the QGIS plugin we use to create the layers for our collection cessions.
+
+You can install this plugin directly inside the QGIS interface under the name of "DBGI". You can also download it [here](https://github.com/digital-botanical-gardens-initiative/gpkg-creator/releases) and install it manually.
+
+You can find the source code [here](https://github.com/digital-botanical-gardens-initiative/gpkg-creator).

vault/Master-Works.Edouard-Brülhart.Scripts.Python.inat-fetcher.md

@@ -2,6 +2,7 @@
 id: 3bls9c5p4unqddel8t5qh41
 title: inat-fetcher
 desc: ''
-updated: 1718355670082
+updated: 1719414584695
 created: 1718355670082
 ---
+

vault/Master-Works.Edouard-Brülhart.Scripts.Python.md

@@ -2,6 +2,7 @@
 id: 5a8trj3kt9x6uytwed5ip4r
 title: Python
 desc: ''
-updated: 1718354378137
+updated: 1719414357551
 created: 1718354378137
 ---
+The Python category contains all the informations about the scripts written in python we use for the DBGI and EMI projects.

vault/Master-Works.Edouard-Brülhart.Scripts.Python.ms-metadata-fetcher.md

@@ -0,0 +1,7 @@
+---
+id: 203775wmsv2vxu1ng2jl2ic
+title: ms-metadata-fetcher
+desc: ''
+updated: 1719413980982
+created: 1719413980982
+---

vault/Master-Works.Edouard-Brülhart.Scripts.directus-db.md

@@ -0,0 +1,11 @@
+---
+id: k67jao2cmygs98zvoo4uwgk
+title: directus-db
+desc: ''
+updated: 1719414297116
+created: 1719414061340
+---
+
+This script permits to deploy the DBGI database and directus instances on docker.
+
+You can find the repository [here](https://github.com/digital-botanical-gardens-initiative/directus-db).

vault/Master-Works.Edouard-Brülhart.Scripts.md

@@ -2,6 +2,7 @@
 id: cixd6xlek1d39o2as4e3tpr
 title: Scripts
 desc: ''
-updated: 1718354362788
+updated: 1719413917054
 created: 1718354362788
 ---
+The Scripts category contains all the informations about the scripts we use for the DBGI and EMI projects.