v.0.1.2 - Free Bird Yeah

v.0.1.2. - Free Bird Yeah

New features:

• Added option for highlighting imputed values (major)
• Added option for manual contrasts (major)
• Changed regex to separate on last underscore for experimental design (minor)
• Changed max.overlaps = Inf for plotting (minor)
• Only export specific plots for imputed/non-imputed values (minor)

v0.1.1 - Stronghold legends

v0.1.1 - Stronghold legends

New features:

• Changed Analysis parameters to analysis_parameters for uniformity
• Added filtering for cRAP proteins present in ProteinGroup column for DiaNN analyses
• Automatically install and load missing packages
• Added option for export LFQ values for raw, normalized and imputated data, together with all other dep object columns as 'complete_output'.

v0.1.0 - The tortoise and the hare

v0.1.0 - The tortoise and the hare

New features:

• Added parameter to filter based on the number of unique peptides
• Results are exported per contrast (2 conditions) and per contrast and condition B as a whole (3 conditions)
• Added BH correction to p-values. Corrected values are included in export per contrast.
• [Contrast]_ratio columns have been renamed as [Contrast]_log2.FC
• Volcano plots are now made for each contrast separately using ggplot2 and will have select proteins highlighted

Select which proteins are highlighted:

• Supply a list of proteins
• Based on criteria for significance (p-value and log2 FC)
• TopN most differential proteins that are below a set p-value

v0.0.2 - Bright blue sky

This release contains options for MaxQuant and Proteome Discoverer output data to be analyzed, in addition to DiaNN output data

v0.0.1 - A new order

Syntax error resolved