v3.0.1

In this version, we changed the parameters used internally for the effective population size, as well as the regularization constant used for the output probabilities. The new parameter combination leads to improved genotyping accuracy. Furthermore, instead of skipping overlapping variants in the input VCF, PanGenie now throws an error. This was done to prevent wrong usage. VCFs with overlapping records don't represent a pangenome in the way expected by PanGenie.