take Filipe's most recent additions #15
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minor fixes
fixed builder to detect biomass added compounds
notebook update
biomass update
biomass bug fix
Checking in biomass and gapfilling fixes 2
Updates to fix gapfilling and string concatenation
genome feature aliases
minor fix
Major speed increase for the omics weighting function and edge case bug fix.
Fix RAST parsing
bumped to version 0.4.0
Sync local dev branch with upstream changes Merging latest updates from upstream/dev to keep our fork in sync with the main repository. This brings in the latest features and bug fixes from the original project.
msatpcorrection.py default path + reactions pathways
changes in MSTemplate file to add additional biomass categories
genome IO
pigment fix
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