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feat: workflow and config templates #29

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merged 24 commits into from
Mar 14, 2025

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ameynert
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@ameynert ameynert commented Jan 30, 2025

  • Populates the config.yml, config_schema.yml, and Snakefile with "hello world" type examples.
  • Adds a "Development" section to the template repo README.md
  • Fleshes out the cookecutter README.md with examples of how to document inputs and outputs, and how to configure and run the workflow

@ameynert ameynert self-assigned this Jan 30, 2025
@ameynert ameynert mentioned this pull request Jan 30, 2025
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@ameynert ameynert marked this pull request as ready for review January 31, 2025 23:38
@ameynert ameynert assigned msto and unassigned ameynert Jan 31, 2025
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This is looking really nice! The new docs and schemas are awesome

@msto msto assigned ameynert and unassigned msto Feb 5, 2025
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@ameynert ameynert assigned msto and unassigned ameynert Mar 10, 2025
@ameynert ameynert requested a review from msto March 10, 2025 17:23
@msto msto assigned ameynert and unassigned msto Mar 10, 2025
@ameynert ameynert requested a review from msto March 10, 2025 23:17
@ameynert ameynert assigned msto and unassigned ameynert Mar 10, 2025
@msto msto assigned ameynert and unassigned msto Mar 11, 2025
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@clintval clintval left a comment

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I'm wondering if the example README and actual example config should be aligned or if I'm missing something with the examples used and how they relate to each other.

@ameynert ameynert merged commit a0c2f25 into am_feat_template_update Mar 14, 2025
ameynert added a commit that referenced this pull request Mar 31, 2025
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3 participants