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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 139 46

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 49 11

  3. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 40 22

  4. absplice absplice Public

    Python 33 4

  5. scooby scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 17 1

Repositories

Showing 10 of 52 repositories
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 3 MIT 1 0 1 Updated Feb 6, 2025
  • PROTRIDER Public
    gagneurlab/PROTRIDER’s past year of commit activity
    Python 0 0 0 0 Updated Feb 3, 2025
  • funcRVP Public

    Bayesian genotype to phenotype model leveraging gene embeddings

    gagneurlab/funcRVP’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 31, 2025
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 139 MIT 46 42 4 Updated Jan 16, 2025
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 40 MIT 22 29 1 Updated Jan 16, 2025
  • scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    gagneurlab/scooby’s past year of commit activity
    Python 17 MIT 1 1 2 Updated Jan 10, 2025
  • scooby_reproducibility Public
    gagneurlab/scooby_reproducibility’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Dec 20, 2024
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    gagneurlab/OUTRIDER’s past year of commit activity
    R 49 MIT 11 15 1 Updated Dec 11, 2024
  • splicemap Public
    gagneurlab/splicemap’s past year of commit activity
    Jupyter Notebook 19 4 2 0 Updated Oct 14, 2024
  • dependencies_DNALM Public

    Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements

    gagneurlab/dependencies_DNALM’s past year of commit activity
    Jupyter Notebook 11 MIT 1 2 0 Updated Oct 4, 2024
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