Code

landing page organism viz (#289)#290

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d-callan wants to merge 31 commits intomaingalaxyproject/brc-analytics:mainfrom genome-vizgalaxyproject/brc-analytics:genome-vizCopy head branch name to clipboard

+1,675-13

Commits

Commits on Feb 13, 2025

• Add d3, @types/d3

  dannon

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  b2e0b23

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• Stub out viz

  dannon

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  6be050a

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• Test data, tweaks.

  dannon

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• refactor(SectionViz): replace JSON data file with TypeScript module for dynamic data generation

  dannon

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• Sunburst tweaks, zoomable, two layers at most.

  dannon

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• Add .venv to .gitignore

  dannon

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  745f8f4

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• Scale down test data for now

  dannon

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  b1f3e24

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• Fix center label handling, deduplicate

  dannon

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• refactor(SectionViz): replace hardcoded depth values with a constant for easier tweaking

  dannon

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• Add a faint stroke to the chart

  dannon

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• Tableau color scheme (for now -- use GXY?)

  dannon

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• add node selection and display details alongside the chart

  dannon

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• refactor(SectionViz): adjust radius calculation and update svg

  dannon

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• feat(SectionViz): add NodeDetails component and integrate with section visualization

  dannon

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  663b8c6

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• fix(SectionViz): adjust fill-opacity logic for node visibility based on depth

  dannon

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  32ae50c

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• fix fill-opacity logic for node visibility

  dannon

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• feat: add data for landing page organism viz

  d-callan

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• feat: add basic icicle alternative

  dannon

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  7df6530

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• fix stroke to only display on visible arcs

  dannon

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• Incremental work as demo'd in weekly call, minor tweaks to display.

  dannon

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• remove Icicle visualization

  dannon

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• sunburst - drop fake data now that we have real data connected

  dannon

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• fix: update sunburst hierarchy calculation to only count leaf nodes --- revisit a slight reduction in arc based on depth to restore the previous look in a more correct way

  dannon

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• homepage viz -- add a few relevant details to info panel

  dannon

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• homepage viz -- use brc analytics as a placeholder for root node

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Commits on Feb 18, 2025

• feat: add root node message to NodeDetails component

  dannon

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• Consolidate isVisible to fix zoom bug and prevent duplicate labels.

  dannon

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Commits on Feb 19, 2025

• removing strains from sunburst

  d-callan

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• Towards more intentional colorschemes

  dannon

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• add taxonomic rank to taxa tree data

  d-callan

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  895adf2

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• Merge branch 'genome-viz' of github.com:galaxyproject/brc-analytics into genome-viz

  d-callan

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