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Add drug2cell tool #6684

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bgruening merged 79 commits intogalaxyproject:maingalaxyproject/tools-iuc:mainfrom Mennayousef:mainMennayousef/tools-iuc:mainCopy head branch name to clipboardFeb 20, 2025

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Commits on Jan 21, 2025

• Create drug2cell.xml

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• Create drug2cell.yaml

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• Create test-data

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• Delete tools/drug2cell/test-data

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• Create pbmc3k_processed.h5ad

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• Update pbmc3k_processed.h5ad

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• Rename drug2cell.yaml to .shed.yml

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• Update tools/drug2cell/drug2cell.xml

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• Update drug2cell.xml

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• use subset of the test data file

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• Merge branch 'main' of https://github.com/Mennayousef/tools-iuc

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• Update drug2cell.xml

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• further subset test data file

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• Merge branch 'main' of https://github.com/Mennayousef/tools-iuc

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update tools/drug2cell/.shed.yml

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• Update tools/drug2cell/drug2cell.xml

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• Update tools/drug2cell/drug2cell.xml

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• Update drug2cell.xml

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• Create .gitignore

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• Delete tools/drug2cell/test-data/expected-output/.gitignore

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• Create .gitkeep

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• Delete tools/drug2cell/test-data/expected-output directory

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• put output files in test-data folder

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• Update tools/drug2cell/drug2cell.xml

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Commits on Jan 26, 2025

• Update pbmc3k_processed.h5ad

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• Merge branch 'main' of https://github.com/Mennayousef/tools-iuc

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• Update drug2cell.xml

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• Update drug2cell.xml

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• fix a few issues found during debugging

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• fix a few issues found during debugging

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• add tiny test file

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Commits on Jan 27, 2025

• Update drug2cell.xml

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• Add files via upload

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• Update tools/drug2cell/drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Delete tools/drug2cell/test-data/pbmc3k_processed.h5ad

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• Create umap_plot.png

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• Create dotplot1.png

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• Create dotplot2.png

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Commits on Feb 2, 2025

• Update tools/drug2cell/drug2cell.xml

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• Update tools/drug2cell/drug2cell.xml

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Commits on Feb 7, 2025

• Update drug2cell.xml

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• Delete tools/drug2cell/test-data/dotplot1.png

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• Delete tools/drug2cell/test-data/dotplot2.png

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• Delete tools/drug2cell/test-data/fake_small_data.h5ad

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• Delete tools/drug2cell/test-data/pbmc3k_tiny.h5ad

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• Delete tools/drug2cell/test-data/umap_plot.png

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• Create test-data

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• Delete tools/drug2cell/test-data

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• Create tiny_adata.h5ad

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• Update tiny_adata.h5ad

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update tiny_adata.h5ad

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• Merge branch 'main' of https://github.com/Mennayousef/tools-iuc

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• Delete tools/drug2cell/test-data/tiny_adata.h5ad

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• Update drug2cell.xml

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• Create d2c_output.h5ad

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• Merge branch 'main' of https://github.com/Mennayousef/tools-iuc

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• Create tiny_adata.h5ad

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• Update d2c_output.h5ad

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• Update drug2cell.xml

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Commits on Feb 11, 2025

• Update tools/drug2cell/drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• Update drug2cell.xml

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• without has_h5_attribute

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• Update drug2cell.xml

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• Update drug2cell.xml

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• add assert_contents to test section

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Commits on Feb 17, 2025

• added value to key

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Commits on Feb 20, 2025

• has_h5_keys instead of has_h5_attributes

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