Update kraken specs for dev config

genomic-medicine-sweden · Jan 17, 2025 · fdbdd64 · fdbdd64
1 parent 3f6c60d
commit fdbdd64
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/configs/nextflow.dev.config b/configs/nextflow.dev.config
@@ -136,6 +136,7 @@ profiles {
 		params.useVirulenceDbs = []
 		params.useSerotypeDbs = []
 		params.targetSampleSize = null
+	    params.krakenDb = "/fs1/resources/ref/micro/k2_standard_20240904"
 	}
 }
 
@@ -247,7 +248,7 @@ process {
 		ext.when = { params.useHostile }
 	}
 	withName: kraken {
-		memory = '46.GB'
+		memory = '100.GB'
 		cpus = 16
 		container = "https://depot.galaxyproject.org/singularity/kraken2:2.1.2--pl5321h9f5acd7_3"
 		ext.args = "--gzip-compressed"