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Bump Severus to 1.3 #557

Merged
merged 4 commits into from
Feb 12, 2025
Merged

Bump Severus to 1.3 #557

merged 4 commits into from
Feb 12, 2025

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fellen31
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Severus has been updated with improvements to SV calling and VCF format fixes.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@fellen31 fellen31 marked this pull request as ready for review February 11, 2025 13:23
@fellen31 fellen31 requested a review from a team as a code owner February 11, 2025 13:23
@fellen31 fellen31 linked an issue Feb 11, 2025 that may be closed by this pull request
Update Severus to 1.3 #540
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jemten
jemten approved these changes Feb 11, 2025
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👍

@fellen31 fellen31 merged commit c0d7c7f into genomic-medicine-sweden:dev Feb 12, 2025
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@fellen31 fellen31 deleted the bump-severus branch February 12, 2025 14:49
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@jemten jemten jemten approved these changes

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Update Severus to 1.3
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@fellen31 @jemten