v0.11.0

What's Changed

• Add --compact option to reduce array dimensionality by @melissalinkert in #279
• Use CommandLine.execute() and return exit code by @sbesson in #287
• Restrict units to what is defined in NGFF schema by @melissalinkert in #289
• MRXS: handle output of newer scanners by @melissalinkert in #283

Full Changelog: v0.10.1...v0.11.0

v0.10.1

What's Changed

• Do not warn about dimension order if XYZCT by @sbesson in #284

Full Changelog: v0.10.0...v0.10.1

v0.10.0

What's Changed

• Add Phenix INI file support by @melissalinkert in #256
• Fix --fill-value to use setFillColor(...) API by @melissalinkert in #257
• Update readme to include section on compression options by @melissalinkert in #262
• Update Bio-Formats to 8.0.0 by @melissalinkert in #263
• Update Bio-Formats to 8.0.1 by @melissalinkert in #264
• Add --no-tiles option to write metadata only by @melissalinkert in #259
• Update to Bio-Formats 8.1.0 and logback 1.3.15 by @melissalinkert in #267
• Update Bio-Formats to 8.1.1 by @melissalinkert in #268
• Make sure the same OMEXMLMetadataRoot is used in all reader MetadataStores by @melissalinkert in #270
• Replace non-existent --compression-options with --compression-properties by @melissalinkert in #272
• MRXS: fix position units and brightfield background color by @melissalinkert in #265
• Update to Bio-Formats 8.2.0 by @melissalinkert in #274
• Allow BioTek plates to be split across multiple subdirectories by @melissalinkert in #223
• Bump Bio-Formats to 8.3.0 by @sbesson in #282
• Do not store zero time increment values in coordinateTransforms by @sbesson in #281
• Document and fail fast if tmp directory is noexec by @melissalinkert in #252
• Deprecate --dimension-order by @melissalinkert in #278

Full Changelog: v0.9.4...v0.10.0

v0.10.0-rc2

What's Changed

• Replace non-existent --compression-options with --compression-properties by @melissalinkert in #272
• MRXS: fix position units and brightfield background color by @melissalinkert in #265

Full Changelog: v0.10.0-rc1...v0.10.0-rc2

v0.10.0-rc1

What's Changed

• Add Phenix INI file support by @melissalinkert in #256
• Fix --fill-value to use setFillColor(...) API by @melissalinkert in #257
• Update readme to include section on compression options by @melissalinkert in #262
• Update Bio-Formats to 8.0.0 by @melissalinkert in #263
• Update Bio-Formats to 8.0.1 by @melissalinkert in #264
• Add --no-tiles option to write metadata only by @melissalinkert in #259
• Update to Bio-Formats 8.1.0 and logback 1.3.15 by @melissalinkert in #267
• Update Bio-Formats to 8.1.1 by @melissalinkert in #268
• Make sure the same OMEXMLMetadataRoot is used in all reader MetadataStores by @melissalinkert in #270

Full Changelog: v0.9.4...v0.10.0-rc1

0.9.4

What's Changed

• Update to Bio-Formats 7.3.1 by @melissalinkert in #253
• MCD: calculate channel count based on metadata, not pixel bytes by @melissalinkert in #255

Full Changelog: v0.9.3...v0.9.4

0.9.3

What's Changed

• Add Java 21 to the CI build matrix by @sbesson in #245
• Update to Bio-Formats 7.3.0 by @melissalinkert in #248
• Add artifact publication step to GitHub workflow by @sbesson in #246
• Add "--no-original-metadata" option to omit original metadata from METADATA.ome.xml by @melissalinkert in #251

Full Changelog: v0.9.2...v0.9.3

0.9.2

What's Changed

• Clarify that .*.bfmemo files won't always be created by @melissalinkert in #240
• Update to Bio-Formats 7.2.0 by @melissalinkert in #241
• Metaxpress: get the correct number of planes for each series by @melissalinkert in #242

Full Changelog: v0.9.1...v0.9.2

0.9.1

See #239.

Full Changelog: v0.9.0...v0.9.1

0.9.0

What's Changed

• Update to Bio-Formats 7.1.0 by @melissalinkert in #232
• Move logging configuration to beginning of call() method by @melissalinkert in #233
• Add support for INI files representing a Metaxpress plate by @melissalinkert in #213
• Add Fluidigm Hyperion .mcd reader by @melissalinkert in #218
• Fix progress and help options by @melissalinkert in #234
• Add notes on --downsample-type by @melissalinkert in #235

Full Changelog: v0.8.0...v0.9.0