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Added test methods to check whether the properties are read back or n…
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…ot after deserialisation
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@goksel
goksel committed Aug 31, 2020
1 parent 30a3051 commit 7a59070
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114 changes: 57 additions & 57 deletions libSBOLj3/output/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.jsonld
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Original file line number Diff line number Diff line change
Expand Up @@ -4,12 +4,12 @@
"@type" : "sbol:Component",
"description" : "Transcriptional terminator consisting of a 64 bp stem-loop",
"displayId" : "BBa_B0010",
"hasSequence" : "BBa_B0010/sequence_1",
"hasSequence" : "BBa_B0010_sequence_1",
"name" : "BBa_B0010",
"role" : "SO:0000141",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_B0010/sequence_1",
"@id" : "BBa_B0010_sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_B0010 sequence",
"displayId" : "sequence_1",
Expand All @@ -21,12 +21,12 @@
"@type" : "sbol:Component",
"description" : "Double terminator consisting of BBa_B0010 and BBa_B0012",
"displayId" : "BBa_B0012",
"hasSequence" : "BBa_B0012/sequence_1",
"hasSequence" : "BBa_B0012_sequence_1",
"name" : "BBa_B0012",
"role" : "SO:0000141",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_B0012/sequence_1",
"@id" : "BBa_B0012_sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_B0012 sequence",
"displayId" : "sequence_1",
Expand All @@ -39,18 +39,10 @@
"description" : "Double terminator consisting of BBa_B0010 and BBa_B0012",
"displayId" : "BBa_B0015",
"hasFeature" : [ "BBa_B0015/subcomponent_1", "BBa_B0015/subcomponent_2" ],
"hasSequence" : "BBa_B0015/sequence_1",
"hasSequence" : "BBa_B0015_sequence_1",
"name" : "BBa_B0015",
"role" : "SO:0000141",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_B0015/sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_B0015 sequence",
"displayId" : "sequence_1",
"elements" : "ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctcacactggctcaccttcgggtgggcctttctgcgtttata",
"encoding" : "sbol:iupacNucleicAcid",
"name" : "BBa_B0015"
}, {
"@id" : "BBa_B0015/subcomponent_1",
"@type" : "sbol:SubComponent",
Expand All @@ -77,17 +69,25 @@
"displayId" : "location_1",
"end" : "162",
"start" : "122"
}, {
"@id" : "BBa_B0015_sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_B0015 sequence",
"displayId" : "sequence_1",
"elements" : "ccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctcacactggctcaccttcgggtgggcctttctgcgtttata",
"encoding" : "sbol:iupacNucleicAcid",
"name" : "BBa_B0015"
}, {
"@id" : "BBa_B0034",
"@type" : "sbol:Component",
"description" : "RBS based on Elowitz repressilator",
"displayId" : "BBa_B0034",
"hasSequence" : "BBa_B0034/sequence_1",
"hasSequence" : "BBa_B0034_sequence_1",
"name" : "BBa_B0034",
"role" : "SO:0000139",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_B0034/sequence_1",
"@id" : "BBa_B0034_sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_B0034 sequence",
"displayId" : "sequence_1",
Expand All @@ -99,43 +99,43 @@
"@type" : "sbol:Component",
"description" : "luxR repressor/activator, (no LVA?)",
"displayId" : "BBa_C0062",
"hasSequence" : "BBa_C0062/sequence_1",
"hasSequence" : "BBa_C0062_sequence_1",
"name" : "luxR",
"role" : "SO:0000316",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_C0062/sequence_1",
"@type" : "sbol:Sequence",
"description" : "luxR sequence",
"displayId" : "sequence_1",
"elements" : "atgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcac",
"encoding" : "sbol:iupacNucleicAcid",
"name" : "luxR"
}, {
"@id" : "BBa_C0062_protein",
"@type" : "sbol:Component",
"description" : "LuxR protein",
"displayId" : "BBa_C0062_protein",
"hasSequence" : "BBa_C0062_protein/sequence_1",
"hasSequence" : "BBa_C0062_protein_sequence_1",
"name" : "LuxR",
"role" : "GO:0003700",
"type" : "SBO:0000252"
}, {
"@id" : "BBa_C0062_protein/sequence_1",
"@id" : "BBa_C0062_protein_sequence_1",
"@type" : "sbol:Sequence",
"description" : "LuxR sequence",
"displayId" : "sequence_1",
"elements" : "NNNNNNNNNNN",
"encoding" : "sbol:iupacAminoAcid",
"name" : "LuxR"
}, {
"@id" : "BBa_C0062_sequence_1",
"@type" : "sbol:Sequence",
"description" : "luxR sequence",
"displayId" : "sequence_1",
"elements" : "atgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcac",
"encoding" : "sbol:iupacNucleicAcid",
"name" : "luxR"
}, {
"@id" : "BBa_F2620",
"@type" : "sbol:Component",
"description" : "PoPS Receiver",
"displayId" : "BBa_F2620",
"hasFeature" : [ "BBa_F2620/subcomponent_6", "BBa_F2620/subcomponent_7", "BBa_F2620/BBa_C0062_protein", "BBa_F2620/subcomponent_4", "BBa_F2620/subcomponent_3", "BBa_F2620/subcomponent_5", "BBa_F2620/TetR_protein" ],
"hasInteraction" : [ "BBa_F2620/interaction_1", "BBa_F2620/interaction_3", "BBa_F2620/interaction_2" ],
"hasSequence" : "BBa_F2620/sequence_1",
"hasSequence" : "BBa_F2620_sequence_1",
"name" : "BBa_F2620",
"role" : "SO:0000704",
"type" : "SBO:0000251"
Expand Down Expand Up @@ -203,14 +203,6 @@
"displayId" : "participation_2",
"participant" : "BBa_F2620/TetR_protein",
"role" : "SBO:0000459"
}, {
"@id" : "BBa_F2620/sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_F2620 sequence",
"displayId" : "sequence_1",
"elements" : "tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcacaaagaggagaaaatgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcacccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctcacactggctcaccttcgggtgggcctttctgcgtttataacctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa",
"encoding" : "sbol:iupacNucleicAcid",
"name" : "BBa_F2620"
}, {
"@id" : "BBa_F2620/subcomponent_3",
"@type" : "sbol:SubComponent",
Expand Down Expand Up @@ -276,17 +268,25 @@
"displayId" : "location_1",
"end" : "1078",
"start" : "1024"
}, {
"@id" : "BBa_F2620_sequence_1",
"@type" : "sbol:Sequence",
"description" : "BBa_F2620 sequence",
"displayId" : "sequence_1",
"elements" : "tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcacaaagaggagaaaatgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcacccaggcatcaaataaaacgaaaggctcagtcgaaagactgggcctttcgttttatctgttgtttgtcggtgaacgctctctcacactggctcaccttcgggtgggcctttctgcgtttataacctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa",
"encoding" : "sbol:iupacNucleicAcid",
"name" : "BBa_F2620"
}, {
"@id" : "BBa_R0040",
"@type" : "sbol:Component",
"description" : "TetR repressible promoter",
"displayId" : "BBa_R0040",
"hasSequence" : "BBa_R0040/sequence_1",
"hasSequence" : "BBa_R0040_sequence_1",
"name" : "pTetR",
"role" : "SO:0000167",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_R0040/sequence_1",
"@id" : "BBa_R0040_sequence_1",
"@type" : "sbol:Sequence",
"description" : "pTetR sequence",
"displayId" : "sequence_1",
Expand All @@ -298,12 +298,12 @@
"@type" : "sbol:Component",
"description" : "Promoter (luxR & HSL regulated -- lux pR)",
"displayId" : "BBa_R0062",
"hasSequence" : "BBa_R0062/sequence_1",
"hasSequence" : "BBa_R0062_sequence_1",
"name" : "lux pR",
"role" : "SO:0000167",
"type" : "SBO:0000251"
}, {
"@id" : "BBa_R0062/sequence_1",
"@id" : "BBa_R0062_sequence_1",
"@type" : "sbol:Sequence",
"description" : "lux pR sequence",
"displayId" : "sequence_1",
Expand All @@ -315,12 +315,12 @@
"@type" : "sbol:Component",
"description" : "TetR protein",
"displayId" : "TetR_protein",
"hasSequence" : "TetR_protein/sequence_1",
"hasSequence" : "TetR_protein_sequence_1",
"name" : "TetR",
"role" : "GO:0003700",
"type" : "SBO:0000252"
}, {
"@id" : "TetR_protein/sequence_1",
"@id" : "TetR_protein_sequence_1",
"@type" : "sbol:Sequence",
"description" : "TetR sequence",
"displayId" : "sequence_1",
Expand All @@ -329,22 +329,6 @@
"name" : "TetR"
} ],
"@context" : {
"name" : {
"@id" : "http://sbols.org/v3#name"
},
"encoding" : {
"@id" : "http://sbols.org/v3#encoding",
"@type" : "@id"
},
"elements" : {
"@id" : "http://sbols.org/v3#elements"
},
"displayId" : {
"@id" : "http://sbols.org/v3#displayId"
},
"description" : {
"@id" : "http://sbols.org/v3#description"
},
"role" : {
"@id" : "http://sbols.org/v3#role",
"@type" : "@id"
Expand All @@ -353,6 +337,9 @@
"@id" : "http://sbols.org/v3#participant",
"@type" : "@id"
},
"displayId" : {
"@id" : "http://sbols.org/v3#displayId"
},
"orientation" : {
"@id" : "http://sbols.org/v3#orientation",
"@type" : "@id"
Expand All @@ -365,6 +352,19 @@
"@id" : "http://sbols.org/v3#hasLocation",
"@type" : "@id"
},
"name" : {
"@id" : "http://sbols.org/v3#name"
},
"encoding" : {
"@id" : "http://sbols.org/v3#encoding",
"@type" : "@id"
},
"elements" : {
"@id" : "http://sbols.org/v3#elements"
},
"description" : {
"@id" : "http://sbols.org/v3#description"
},
"type" : {
"@id" : "http://sbols.org/v3#type",
"@type" : "@id"
Expand Down
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