pairwise

A Clojure/Clojurescript library for pairwise sequence comparison using dynamic programming algorithms (Needleman-Wunsch and Smith-Waterman) with linear gap penalties.

When published on github, the application will run at demo.

Usage

This project now uses Clojure CLI tools and Shadow CLJS for building.

Development

# Install dependencies
npm install

# Start development server with hot reloading
npm run dev
# or
clojure -M:dev watch app

# Open http://localhost:3000 in your browser

Building

# Build demo site
npm run demo

# Build production version
npm run build

Testing

# Run tests
npm test
# or
clojure -M:test