This repo contains models and code to model the evolution and spread of insecticide resistance among malaria vectors in Africa. It uses a semi-mechanistic model to predict future levels of resistance across the continent, fitting closely to resistance data.
Running order of scripts:
To be tidied: this may not be the correct order
- packages.R
- functions.R
- prep_admin.R
- prep_bioassays.R
- prep_rasters.R
- calculate_ingredient_fractions.R
- fit_model_glm.R
- fit_model.R
- illustrate_validation.R
- mtm_ir_explore.R
- ploidy_demo.R
- predict.R
- summarise_model_fit.R
- visualise_colony_net_bioassay.R
- visualise_data.R
- fig_admin_maps.R
- fig_baseline_susceptibility.R
- fig_bioassay_maps.R
- fig_covariate_effects.R
- fig_covariate_maps.R
- fig_data_distribution.R
- fig_illustrate_bioassay_variability.R
- fig_internal_validation.R
- fig_ir_maps.R
- fig_temporal_preds_data.R
- fig_temporal_preds_net_use.R