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alt text Aussie Docker

A docker image for Single-Cell RNA and Spatial transcriptomic analysis

0. Change Log

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1. Included tools

  • Base Image: nvidia/cuda:12.1.0-base-ubuntu22.04
  • Languages: Python, R, Julia
  • scRNAseq Analysis Pipelines: Seurat, Scanpy
  • Spatial Transcriptomics: CellCharter, CellScopes, Tangram
  • Cell-type annotation: SingleR, VoxHunt
  • GSEA: fgsea
  • GRN Analysis: SCENIC
  • CNA: inferCNV

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A docker image for single-cell RNA and Spatial analysis

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