A docker image for Single-Cell RNA and Spatial transcriptomic analysis
See Change Log
- Base Image: nvidia/cuda:12.1.0-base-ubuntu22.04
- Languages: Python, R, Julia
- scRNAseq Analysis Pipelines: Seurat, Scanpy
- Spatial Transcriptomics: CellCharter, CellScopes, Tangram
- Cell-type annotation: SingleR, VoxHunt
- GSEA: fgsea
- GRN Analysis: SCENIC
- CNA: inferCNV