Skip to content

Commit

Permalink
Deploy docs to develop by GitHub Actions triggered by 02d1243
Browse files Browse the repository at this point in the history
  • Loading branch information
PHYSBO Developers committed Jan 30, 2025
1 parent 0d76670 commit e15262c
Show file tree
Hide file tree
Showing 202 changed files with 842 additions and 470 deletions.
2 changes: 1 addition & 1 deletion manual/develop/en/.buildinfo
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 0fe31368b1d5d93aa38fd14080e880b1
config: 8dc6ba884dcd1e8d9126176ddc01e456
tags: 645f666f9bcd5a90fca523b33c5a78b7
4 changes: 2 additions & 2 deletions manual/develop/en/_modules/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &mdash; PHYSBO 2.1-dev documentation</title>
<title>Overview: module code &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=e59714d7" />


<script src="../_static/jquery.js?v=5d32c60e"></script>
<script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../_static/doctools.js?v=9bcbadda"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down
4 changes: 2 additions & 2 deletions manual/develop/en/_modules/physbo/blm/basis/fourier.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.basis.fourier &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.basis.fourier &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down
6 changes: 4 additions & 2 deletions manual/develop/en/_modules/physbo/blm/core/model.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.core.model &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.core.model &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down Expand Up @@ -321,6 +321,8 @@ <h1>Source code for physbo.blm.core.model</h1><div class="highlight"><pre>
<span class="sd"> Returns</span>
<span class="sd"> =======</span>
<span class="sd"> numpy.ndarray</span>
<span class="sd"> Returned shape is (num_points) if diag=true, (num_points, num_points) if diag=false,</span>
<span class="sd"> where num_points is the number of points in X.</span>

<span class="sd"> See also</span>
<span class="sd"> ========</span>
Expand Down
6 changes: 4 additions & 2 deletions manual/develop/en/_modules/physbo/blm/inf/exact.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.inf.exact &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.inf.exact &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down Expand Up @@ -265,6 +265,8 @@ <h1>Source code for physbo.blm.inf.exact</h1><div class="highlight"><pre>
<span class="sd"> Returns</span>
<span class="sd"> =======</span>
<span class="sd"> numpy.ndarray</span>
<span class="sd"> Returned shape is (num_points) if diag=true, (num_points, num_points) if diag=false,</span>
<span class="sd"> where num_points is the number of points in X.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="n">Psi</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">Psi</span> <span class="o">=</span> <span class="n">blm</span><span class="o">.</span><span class="n">lik</span><span class="o">.</span><span class="n">linear</span><span class="o">.</span><span class="n">basis</span><span class="o">.</span><span class="n">get_basis</span><span class="p">(</span><span class="n">X</span><span class="p">)</span>
Expand Down
4 changes: 2 additions & 2 deletions manual/develop/en/_modules/physbo/blm/lik/gauss.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.lik.gauss &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.lik.gauss &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down
4 changes: 2 additions & 2 deletions manual/develop/en/_modules/physbo/blm/lik/linear.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.lik.linear &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.lik.linear &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down
11 changes: 8 additions & 3 deletions manual/develop/en/_modules/physbo/blm/predictor.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.predictor &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.predictor &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down Expand Up @@ -195,6 +195,8 @@ <h1>Source code for physbo.blm.predictor</h1><div class="highlight"><pre>
<span class="sd"> Returns</span>
<span class="sd"> =======</span>
<span class="sd"> numpy.ndarray</span>
<span class="sd"> Returned shape is (num_points),</span>
<span class="sd"> where num_points is the number of points in test.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">blm</span><span class="o">.</span><span class="n">stats</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">prepare</span><span class="p">(</span><span class="n">training</span><span class="p">)</span>
Expand All @@ -213,10 +215,13 @@ <h1>Source code for physbo.blm.predictor</h1><div class="highlight"><pre>
<span class="sd"> training dataset. If already trained, the model does not use this.</span>
<span class="sd"> test: physbo.variable</span>
<span class="sd"> inputs</span>

<span class="sd"> diag: bool</span>
<span class="sd"> If true, only variances (diagonal elements) are returned.</span>
<span class="sd"> Returns</span>
<span class="sd"> =======</span>
<span class="sd"> numpy.ndarray</span>
<span class="sd"> Returned shape is (num_points) if diag=true, (num_points, num_points) if diag=false,</span>
<span class="sd"> where num_points is the number of points in test.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">blm</span><span class="o">.</span><span class="n">stats</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">prepare</span><span class="p">(</span><span class="n">training</span><span class="p">)</span>
Expand Down
4 changes: 2 additions & 2 deletions manual/develop/en/_modules/physbo/blm/prior/gauss.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.blm.prior.gauss &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.blm.prior.gauss &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down
4 changes: 2 additions & 2 deletions manual/develop/en/_modules/physbo/gp/core/learning.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.gp.core.learning &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.gp.core.learning &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down
10 changes: 6 additions & 4 deletions manual/develop/en/_modules/physbo/gp/core/model.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.gp.core.model &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.gp.core.model &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down Expand Up @@ -381,11 +381,13 @@ <h1>Source code for physbo.gp.core.model</h1><div class="highlight"><pre>
<span class="sd"> params: numpy.ndarray</span>
<span class="sd"> Parameters</span>
<span class="sd"> diag: bool</span>
<span class="sd"> If X is the diagonalization matrix, true.</span>
<span class="sd"> If true, only variances (diagonal elements) are returned.</span>

<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> physbo.gp.inf.exact.get_post_fcov</span>
<span class="sd"> numpy.ndarray</span>
<span class="sd"> Returned shape is (num_points) if diag=true, (num_points, num_points) if diag=false,</span>
<span class="sd"> where num_points is the number of points in X.</span>

<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="n">params</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
Expand Down
11 changes: 7 additions & 4 deletions manual/develop/en/_modules/physbo/gp/core/prior.html
Original file line number Diff line number Diff line change
Expand Up @@ -5,14 +5,14 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>physbo.gp.core.prior &mdash; PHYSBO 2.1-dev documentation</title>
<title>physbo.gp.core.prior &mdash; PHYSBO 2.2-dev documentation</title>
<link rel="stylesheet" type="text/css" href="../../../../_static/pygments.css?v=03e43079" />
<link rel="stylesheet" type="text/css" href="../../../../_static/css/theme.css?v=e59714d7" />


<script src="../../../../_static/jquery.js?v=5d32c60e"></script>
<script src="../../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="../../../../_static/documentation_options.js?v=6fddfc0f"></script>
<script src="../../../../_static/documentation_options.js?v=b33cbb84"></script>
<script src="../../../../_static/doctools.js?v=9bcbadda"></script>
<script src="../../../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
Expand Down Expand Up @@ -99,7 +99,7 @@ <h1>Source code for physbo.gp.core.prior</h1><div class="highlight"><pre>
<span class="sd"> ----------</span>
<span class="sd"> mean: numpy.ndarray</span>
<span class="sd"> mean values of prior</span>
<span class="sd"> cov: numpy.ndarray</span>
<span class="sd"> cov: physbo.gp.cov.gauss</span>
<span class="sd"> covariance matrix of priors</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="bp">self</span><span class="o">.</span><span class="n">mean</span> <span class="o">=</span> <span class="n">mean</span>
Expand Down Expand Up @@ -185,10 +185,13 @@ <h1>Source code for physbo.gp.core.prior</h1><div class="highlight"><pre>
<span class="sd"> params: numpy.ndarray</span>
<span class="sd"> Parameters.</span>
<span class="sd"> diag: bool</span>
<span class="sd"> If X is the diagonalization matrix, true.</span>
<span class="sd"> If true, only variances (diagonal elements) are returned.</span>

<span class="sd"> Returns</span>
<span class="sd"> -------</span>
<span class="sd"> numpy.ndarray</span>
<span class="sd"> Returned shape is (num_points) if diag=true, (num_points, num_points) if diag=false,</span>
<span class="sd"> where num_points is the number of points in X.</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">if</span> <span class="n">params</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
<span class="n">params</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">)</span>
Expand Down
Loading

0 comments on commit e15262c

Please sign in to comment.