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Process ocean audio data archives to daily analysis products of hybrid millidecade spectra using PyPAM.

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PyPAM based data processing

The mbari-pbp package allows to process ocean audio data archives to daily analysis products of hybrid millidecade spectra using PyPAM.

Status: Functional version, including support for cloud based processing.

  • JSON generation of timekeeping with indication of start and duration of recognized sound files
  • Audio file processing
    • Frequency and psd array output
    • Concatenation of processed 1-minute segments for daily product
    • Calibration with given sensitivity file (NetCDF), or flat sensitivity value
  • Data products
    • NetCDF with metadata
    • Summary plot
  • Cloud processing
    • Inputs can be downloaded from and uploaded to S3
    • Inputs can be downloaded from public GCS bucket
    • Outputs can be uploaded to GCS

Example plot of a daily hybrid millidecade generated with the pbp-hmb-plot command:

Documentation

Official documentation is available at docs.mbari.org/pbp.

Installation

Please see https://docs.mbari.org/pbp/#installation.

Programs and API

The mbari-pbp package includes command line interface (CLI) programs, and also provides APIs you can use in your Python scripts or notebooks.

CLI Programs

The package includes the following CLI programs:

Program Description
pbp-meta-gen Generate JSON files with audio metadata
pbp-hmb-gen Main HMB generation program
pbp-cloud Program for cloud based processing
pbp-hmb-plot Utility program to plot HMB product

API

API documentation is available at docs.mbari.org/pbp/api.

References

Development

Interested in contributing? Please see DEVELOPMENT.md for details.

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Process ocean audio data archives to daily analysis products of hybrid millidecade spectra using PyPAM.

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