Version 0.3

Version 0.3 - Oct. 21, 2017

• Memory-saving options in extract_CpG_data.py and combine_CpG_sites.py (both -b). With this option, the scripts will analyze one chromosome (reference sequence) at a time, rather than loading/saving all data at once. The input SAM must be coordinate-sorted for extract_CpG_data.py, and the input files must be in the same sort order for combine_CpG_sites.py.