[docs] start a tutorial on debugging JuMP models

docs/make.jl

@@ -104,8 +104,9 @@ const _PAGES = [
             "tutorials/getting_started/getting_started_with_JuMP.md",
             "tutorials/getting_started/getting_started_with_sets_and_indexing.md",
             "tutorials/getting_started/getting_started_with_data_and_plotting.md",
-            "tutorials/getting_started/performance_tips.md",
+            "tutorials/getting_started/debugging.md",
             "tutorials/getting_started/design_patterns_for_larger_models.md",
+            "tutorials/getting_started/performance_tips.md",
         ],
         "Linear programs" => [
             "tutorials/linear/introduction.md",

docs/src/tutorials/getting_started/debugging.jl

@@ -0,0 +1,310 @@
+# Copyright (c) 2021 Oscar Dowson and contributors                               #src
+#                                                                                #src
+# Permission is hereby granted, free of charge, to any person obtaining a copy   #src
+# of this software and associated documentation files (the "Software"), to deal  #src
+# in the Software without restriction, including without limitation the rights   #src
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell      #src
+# copies of the Software, and to permit persons to whom the Software is          #src
+# furnished to do so, subject to the following conditions:                       #src
+#                                                                                #src
+# The above copyright notice and this permission notice shall be included in all #src
+# copies or substantial portions of the Software.                                #src
+#                                                                                #src
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR     #src
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,       #src
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE    #src
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER         #src
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,  #src
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE  #src
+# SOFTWARE.                                                                      #src
+
+# # Debugging
+
+# Dealing with bugs is an unavoidable part of coding optimization models in
+# any framework, including JuMP. Sources of bugs include not only generic coding
+# errors (method errors, typos, off-by-one issues), but also semantic mistakes
+# in the formulation of an optimization problem and the incorrect use of a
+# solver.
+
+# This tutorial explains some common sources of bugs and modeling issues that
+# you might encounter when writing models in JuMP, and it suggests a variety of
+# strategies to deal with them.
+
+# !!! tip
+#     This tutorial is more advanced than the other "Getting started" tutorials.
+#     It's in the "Getting started" section to give you an early preview of how
+#     to debug JuMP models. However, if you are new to JuMP, you may want to
+#     briefly skim the tutorial, and come back to it once you have written a few
+#     JuMP models.
+
+using JuMP
+import HiGHS
+
+# ## Getting help
+
+# Debugging can be a frustrating part of modeling, particularly if you're new to
+# optimization and programming. If you're stuck, join the
+# [community forum](https://discourse.julialang.org/c/domain/opt/13) to search
+# for answers to commonly asked questions.
+
+# Before asking a new question, make sure to read the post
+# [Make it easier to help you](https://discourse.julialang.org/t/please-read-make-it-easier-to-help-you/14757),
+# which contains a number of tips on how to ask a good question.
+
+# Above all else, take time to simplify your code as much as possible. The
+# fewer lines of code you can post that reproduces the same issue, the faster
+# someone can answer your question.
+
+# ## Debugging Julia code
+
+# Read the [Debugging chapter](https://benlauwens.github.io/ThinkJulia.jl/latest/book.html#chap21)
+# in the book [ThinkJulia.jl](https://benlauwens.github.io/ThinkJulia.jl/latest/book.html).
+# It has a number of great tips and tricks for debugging Julia code.
+
+# ## Debugging solve failures
+
+# When a solver experiences an issue that prevents it from finding an optimal
+# solution (or proving that one does not exist), JuMP may return one of a number
+# of problematic [`termination status`](@ref)es.
+
+# For example, if the solver found a solution, but experienced numerical
+# imprecision, it may return a status such as `ALMOST_OPTIMAL` or
+# `ALMOST_LOCALLY_SOLVED` indicating that the problem was solved to a relaxed
+# set of tolerances. Alternatively, the solver may return a problematic status
+# such as `NUMERICAL_ERROR`, `SLOW_PROGRESS`, or `OTHER_ERROR`, indicating that
+# it could not find a solution to the problem.
+
+# Most solvers can experience numerical imprecision because they use
+# [floating-point arithmetic](https://en.wikipedia.org/wiki/Floating-point_arithmetic)
+# to perform operations such as addition, subtraction, and multiplication. These
+# operations aren't exact, and small errors can accrue between the theoretical
+# value and the value that the computer computes. For example:
+
+0.1 * 3 == 0.3
+
+# !!! tip
+#     Read the [Guidlines for numerical issues](https://www.gurobi.com/documentation/9.5/refman/guidelines_for_numerical_i.html)
+#     section of the Gurobi documentation, along with the
+#     [Debugging numerical problems](https://yalmip.github.io/inside/debuggingnumerics/)
+#     section of the YALMIP documentation.
+
+# ### Common sources
+
+# Common sources of solve failures are:
+#
+#  * Very large numbers and very small numbers as problem coefficients. Exactly
+#    what "large" is depends on the solver and the problem, but in general,
+#    values above 1e6 or smaller than 1e-6 cause problems.
+#  * Nonlinear problems with functions that are not defined in parts of their
+#    domain. For example, minimizing `log(x)` where `x >= 0` is undefined when
+#    `x = 0` (a common starting value).
+
+# ### Strategies
+
+# Strategies to debug sources of solve failures include:
+#
+#  * Rescale variables in the problem and their associated coefficients to
+#    make the magnitudes of all coefficients in the 1e-4 to 1e4 range. For
+#    example, that might mean rescaling a variable from measuring distance in
+#    centimeters to kilometers.
+#  * Try a different solver. Some solvers might be more robust than others for a
+#    particular problem.
+#  * Read the documentation of your solver, and try settings that encourage
+#    numerical robustness.
+#  * Set bounds or add constraints so that all nonlinear functions are defined
+#    across all of the feasible region. This particularly applies for functions
+#    like `1 / x` and `log(x)` which are not defined for `x = 0`.
+
+# ## Debugging incorrect results
+
+# Sometimes, you might find that the solver returns an "optimal" solution that
+# is incorrect according to the model you are trying to solve (perhaps the
+# solution is suboptimal, or it doesn't satisfy some of the constraints).
+
+# Incorrect results can be hard to detect and debug, because the solver gives no
+# hints that there is a problem. Indeed, the [`termination_status`](@ref) will
+# likely be `OPTIMAL` and a solution will be available.
+
+# ### Common sources
+
+# Common sources of incorrect results are:
+#
+#  * A modeling error, so that your JuMP model does not match the formulation
+#    you have on paper
+#  * Not accounting for the tolerances that solvers use (for example, if `x` is
+#    binary, a value like `x = 1.0000001` may still be considered feasible)
+#  * A bug in JuMP or the solver.
+
+# The probability of the issue being a bug in JuMP or the solver is much smaller
+# than a modeling error. When in doubt, first assume there is a bug in your code
+# before assuming that there is a bug in JuMP.
+
+# ### Strategies
+
+# Strategies to debug sources of incorrect results include:
+
+#  * Print your JuMP model to see if it matches the formulation you have on
+#    paper. Look out for incorrect signs `+` instead of `-`, and off-by-one
+#    errors such as `x[t]` instead of `x[t-1]`.
+#  * Check that you are not using exact comparisons like `value(x) == 1.0`;
+#    always use `isapprox(value(x), 1.0; atol = 1e-6)` where you manually
+#    specify the comparison tolerance.
+#  * Try a different solver. If one solver succeeds where another doesn't this
+#    is a sign that the problem is a numerical issue or a bug in the solver.
+
+# ## Debugging an infeasible model
+
+# A model is infeasible if there is no primal solution that satisfies all of
+# the constraints. In general, an infeasible model means one of two things:
+#
+#  * Your problem really has no feasible solution
+#  * There is a mistake in your model.
+
+# ### Example
+
+# A simple example of an infeasible model is:
+
+model = Model(HiGHS.Optimizer)
+set_silent(model)
+@variable(model, x >= 0)
+@objective(model, Max, 2x + 1)
+@constraint(model, 2x - 1 <= -2)
+
+# because the bound says that `x >= 0`, but we can rewrite the constraint to be
+# `x <= -1/2`. When the problem is infeasible, JuMP may return one of a number
+# of statuses. The most common is `INFEASIBLE`:
+
+optimize!(model)
+termination_status(model)
+
+# Depending on the solver, you may also receive `INFEASIBLE_OR_UNBOUNDED` or
+# `LOCALLY_INFEASIBLE`.
+
+# A termination status of `INFEASIBLE_OR_UNBOUNDED` means that the solver could
+# not prove if the solver was infeasible or unbounded, only that the model does
+# not have a finite feasible optimal solution.
+
+# Nonlinear optimizers such as Ipopt may return the status `LOCALLY_INFEASIBLE`.
+# This does not mean that the solver _proved_ no feasible solution exists, only
+# that it could not find one. If you know a primal feasible point, try providing
+# it as a starting point using [`set_start_value`](@ref) and re-optimize.
+
+# ### Common sources
+
+# Common sources of infeasibility are:
+#
+#  * Incorrect units, for example, using a lower bound of megawatts and an upper
+#    bound of kilowatts
+#  * Using `+` instead of `-` in a constraint
+#  * Off-by-one and related errors, for example, using `x[t]` instead of
+#    `x[t-1]` in part of a constraint
+#  * Otherwise invalid mathematical formulations
+
+# ### Strategies
+
+# Strategies to debug sources of infeasibility include:
+
+#  * Iteratively comment out a constraint (or block of constraints) and re-solve
+#    the problem. When you find a constraint that makes the problem infeasible
+#    when added, check the constraint carefully for errors.
+#  * If the problem is still infeasible with all constraints commented out,
+#    check all variable bounds. Do they use the right data?
+#  * If you have a known feasible solution, use [`primal_feasibility_report`](@ref)
+#    to evaluate the constraints and check for violations. You'll probably find
+#    that you have a typo in one of the constraints.
+#  * Try a different solver. Sometimes, solvers have bugs, and they can
+#    incorrectly report a problem as infeasible when it isn't. If you find such
+#    a case where one solver reports the problem is infeasible and another can
+#    find an optimal solution, please report it by opening an issue on the
+#    GitHub repository of the solver that reports infeasibility.
+
+# !!! tip
+#     Some solvers also have specialized support for debugging sources of
+#     infeasibility via an [irreducible infeasible subsystem](@ref Conflicts).
+#     To see if your solver has support, try calling [`compute_conflict!`](@ref):
+#     ```julia
+#     julia> compute_conflict!(model)
+#     ERROR: ArgumentError: The optimizer HiGHS.Optimizer does not support `compute_conflict!`
+#     ```
+#     In this case, HiGHS does not support computign conflicts, but other
+#     solvers such as Gurobi and CPLEX do. If the solver does support computing
+#     conflicts, read [Conflicts](@ref) for more details.
+
+# ## Debugging an unbounded model
+
+# A model is unbounded if there is no limit on how good the objective value can
+# get. Most often, an unbounded model means that you have an error in your
+# modeling, because all physical systems have limits. (You cannot make an
+# infinite amount of profit.)
+
+# ### Example
+
+# A simple example of an unbounded model is:
+
+model = Model(HiGHS.Optimizer)
+set_silent(model)
+@variable(model, x >= 0)
+@objective(model, Max, 2x + 1)
+
+# because we can increase `x` without limit, and the objective value `2x + 1`
+# gets better as `x` increases.
+
+# When the problem is unbounded, JuMP may return one of a number of statuses.
+# The most common is `DUAL_INFEASIBLE`:
+
+optimize!(model)
+termination_status(model)
+
+# Depending on the solver, you may also receive `INFEASIBLE_OR_UNBOUNDED` or
+# an error code like `NORM_LIMIT`.
+
+# ### Common sources
+
+# Common sources of unboundedness are:
+#
+#  * Using `Max` instead of `Min`
+#  * Omitting variable bounds, such as `0 <= x <= 1`
+#  * Using `+` instead of `-` in a term of the objective function.
+
+# ### Strategies
+
+# Strategies to debug sources of unboundedness include:
+
+#  * Double check whether you intended `Min` or `Max` in the [`@objective`](@ref)
+#    line.
+#  * Print the objective function with `print(objective_function(model))` and
+#    verify that the value and sign of each coefficient is as you expect.
+#  * Add large bounds to all variables that are free or have one-sided bounds,
+#    then re-solve the problem. Because all variables are now bounded, the
+#    problem will have a finite optimal solution. Look at the value of each
+#    variable in the optimal solution to see if it is at one of the new bounds.
+#    If it is, you either need to specify a better bound for that variable, or
+#    there might be a mistake in the objective function associated with that
+#    variable (for example, a `+` instead of a `-`).
+
+# If there are too many variables to add bounds to, or there are too many terms
+# to examine by hand, another strategy is to create a new variable with a large
+# upper bound (if maximizing, lower bound if minimizing) and a constraint that
+# the variable must be less-than or equal to the expression of the objective
+# function. For example:
+
+model = Model(HiGHS.Optimizer)
+set_silent(model)
+@variable(model, x >= 0)
+## @objective(model, Max, 2x + 1)
+@variable(model, objective <= 10_000)
+@constraint(model, objective <= 2x + 1)
+@objective(model, Max, objective)
+
+# This new model has a finite optimal solution, so we can solve it and then look
+# for variables with large positive or negative values in the optimal solution.
+
+optimize!(model)
+for var in all_variables(model)
+    if var == objective
+        continue
+    end
+    if abs(value(var)) > 1e3
+        println("Variable `$(name(var))` may be unbounded")
+    end
+end