exposed epsilon pt2

khanlab · Jan 27, 2025 · 6b240c0 · 6b240c0
1 parent 4079256
commit 6b240c0
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/hippunfold/workflow/scripts/gen_isosurface.py b/hippunfold/workflow/scripts/gen_isosurface.py
@@ -170,7 +170,8 @@ def compute_geodesic_distances(vertices, faces, source_indices):
     ]  # really hope there's no x-y switching fuckery here!
 
 # keep vertices that are in a nice coordinate range
-good_v = np.where(np.logical_and(coord_at_V < 0.9, coord_at_V > 0.1))[0]
+epsilon - snakemake.params.coords_epsilon
+good_v = np.where(np.logical_and(coord_at_V < (1-epsilon), coord_at_V > epsilon))[0]
 
 # morphological open
 maxdist = compute_geodesic_distances(points, faces, good_v)