v1.3.5

Fixes GHA workflow for Pypi release

Full Changelog: v1.3.4...v1.3.5

v1.3.4

• Package now relies on pyproject.toml for build configuration with hatch.
• Binaries for louvain and leiden clustering algorithms are now embedded in the package.
• Uses pre-commit hooks for code formatting and linting.
• Fix deprecated Bio.SeqUtils.GC to Bio.SeqUtils.gc_fraction.
• Biopython is pinned <= 1.80 to work with micomplete 1.1.1.

Full Changelog: v1.3.3...v1.3.4

Version 1.3.3

Version 1.3.3 - 2024-11-04

• Improve ci.
• Add pairix as requirements.
• Correct pipeline bug.

Version 1.3.2

Version 1.3.2 - 2023-11-27

• Add log files for all modules.

Version 1.3.1

Version 1.3.1 - 2023-11-20

• Switch pairs as an argument for metator mge.
• Correct bug in QC.
• Add checkV in the requirements.

Version 1.3.0

Version 1.3.0 - 2023-11-09

• Merge MetaVIR (https://github.com/ABignaud/MetaVir) module to MetaTOR.
• Automatic generation of the compressed and sorted pairs files in the main
  pipeline.
• Correct QC issues with low-quality libraries.
• Add a conda environment file.

Version 1.2.8

Version 1.2.8 - 2023-04-12

• Correct issue with anvio binning file.

Version 1.2.7

Version 1.2.7 - 2023-04-07

• Correct bug during final plot generation.

Version 1.2.6

Version 1.2.6 - 2023-04-05

• Correct bug of contigs data final bin value from multiple recursive steps.

Version 1.2.5

Version 1.2.5 - 2023-04-05

• Remove recursive parallel which seems to failed in some case.
• Correct bug of contigs data final bin value from multiple recursive steps.
• Add exception to avoid error while mutliple metator are started from the same
  working directory.