Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Free energy #103

Open
wants to merge 17 commits into
base: main
Choose a base branch
from
Open
2 changes: 2 additions & 0 deletions docs/src/software/i-pi.sec
Original file line number Diff line number Diff line change
Expand Up @@ -13,4 +13,6 @@ it on the `ipi-code website <http://ipi-code.org>`_, the `documentation pages
- examples/pi-metad/pi-metad
- examples/heat-capacity/heat-capacity
- examples/pi-mts-rpc/mts-rpc
- examples/free-energy/free-energy
- examples/water-model/water-model

2 changes: 2 additions & 0 deletions docs/src/topics/analysis.sec
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,6 @@ for post-processing, diagnostics or visualization purposes.
- examples/gaas-map/gaas-map
- examples/lpr/lpr
- examples/roy-gch/roy-gch
- examples/free-energy/free-energy
- examples/rotate-equivariants/rotate-equivariants

2 changes: 2 additions & 0 deletions examples/free-energy/README.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
Free energy methods
===================
3 changes: 3 additions & 0 deletions examples/free-energy/cti/init.xyz
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
1
# CELL(abcABC): 188.97261 188.97261 188.97261 90.00000 90.00000 90.00000 Step: 13 Bead: 0 positions{atomic_unit} cell{atomic_unit}
H 1.99641e+00 -6.18337e-10 1.54584e-09
19 changes: 19 additions & 0 deletions examples/free-energy/environment.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
channels:
- plumed/label/nightly
- conda-forge
dependencies:
- python=3.11
- pip
- gfortran
- make
- git
- plumed
- pip:
- ase==3.22.1
- pyfftw
- chemiscope
- git+https://github.com/i-pi/i-pi.git@main#egg=ipi
- matplotlib
variables:
PYTHONPATH:
PLUMED_KERNEL:
Loading