restore dataclass_extensions. See #345

[cmungall]

upstream_repo: linkml/linkml
upstream_branch: pr-2358

This was prematurely removed in #345. A lot of existing code depends on this

Note the changes from #345 temporarily made their way into a 1.9.0 release, but this was promptly yanked

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 63.79%. Comparing base (a1db174) to head (8f4ede4).
Report is 18 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #384      +/-   ##
==========================================
+ Coverage   63.76%   63.79%   +0.02%     
==========================================
  Files          62       63       +1     
  Lines        8945     8951       +6     
  Branches     2587     2587              
==========================================
+ Hits         5704     5710       +6     
  Misses       2634     2634              
  Partials      607      607              

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[dalito]

#345 also removed the test for this code which was in the file tests/test_issues/test_issue_718a.py

[cmungall]

This looks like it's failing some of the downstream linkml tests.

I looked at the first one, which dates back to:
biolink/biolinkml#326

The test is

FAILED tests/test_issues/test_issue_316.py::test_alt_description_2 - TypeError: __init__() got an unexpected keyword argument 'text'

def test_alt_description_2(input_path):
    with pytest.raises(ValueError, match="description must be supplied"):
        YAMLGenerator(input_path("issue_326a.yaml")).serialize(validateonly=True)

This is a little rigid. An exception is still raised, but with the changes in #345, the reason/exception type/message changes (since it is now caught at init time)

Same with

FAILED tests/test_utils/test_load_raw_schema.py::test_representation_errors - TypeError: __init__() got an unexpected keyword argument 'schema1'

def test_representation_errors(input_path):
    """Test malformed schema elements"""
    fn = input_path("typeerror1.yaml")
    with pytest.raises(ValueError):
        SchemaLoader(fn)

and

FAILED tests/test_validator/test_validate.py::test_not_a_valid_schema - TypeError: __init__() got an unexpected keyword argument 'foo'

def test_not_a_valid_schema():
    instance = {}
    schema = {"foo": "bar"}
    with pytest.raises(ValueError, match="Invalid schema"):
        validate(instance, schema)

These tests have been switched to use the regenerated linkml-model code

linkml/linkml#2589

but they have become too rigid in the other direction

What I am surprised about is how this made it through before..

[dalito]

This seems to fail because dynamic versioning has to be installed differently with poetry 2.x

After pipx install poetry add pipx inject poetry poetry-dynamic-versioning (as in #364)

[sierra-moxon]

🍏 📗 🟢 💚

[sierra-moxon]

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