dockerHSSM

.github/workflows/docker-image.yml

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+name: dockerHSSM CI
+
+on:
+  workflow_dispatch:
+  release:
+    types: [published]
+
+jobs:
+  buildx:
+    runs-on: ubuntu-latest
+    steps:
+
+    - name: Checkout
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.11'
+    - name: Install toml package
+      run: pip install toml
+    - name: Read version from pyproject.toml
+      id: get_version
+      run: |
+        VERSION=$(python -c "import toml; print(toml.load('pyproject.toml')['tool']['poetry']['version'])")
+        echo "HSSM_VERSION=hssm:$VERSION" >>$GITHUB_ENV
+
+    - name: Docker login
+      uses: docker/login-action@v1
+      with:
+        username: ${{ secrets.DOCKERHUB_USERNAME }}
+        password: ${{ secrets.DOCKERHUB_PASSWORD }} 
+
+    - name: Set up Docker Buildx
+      uses: docker/setup-buildx-action@v3
+
+    - name: Build the Combined Manifest
+      run: docker buildx build --platform linux/amd64,linux/arm64 -t ${{ secrets.DOCKERHUB_USERNAME }}/${{env.HSSM_VERSION}} -f Dockerfile . --push
+
+    - name: Build the Newest Manifest
+      run: docker buildx build --platform linux/amd64,linux/arm64 -t ${{ secrets.DOCKERHUB_USERNAME }}/hssm:latest -f Dockerfile . --push

Dockerfile

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+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+
+# This Dockerfile is for HSSM
+# The buid from the base of scipy-notebook, based on python 3.11
+
+FROM jupyter/scipy-notebook:python-3.11
+
+LABEL maintainer="Hu Chuan-Peng <[email protected]>"
+
+USER root
+
+RUN apt-get update -y && \
+  apt-get upgrade -y && \
+  apt-get install -y apt-utils && \
+  apt-get install -y build-essential &&\
+  apt-get install -y graphviz &&\
+  rm -rf /var/lib/apt/lists/*
+
+USER $NB_UID
+
+RUN pip install graphviz -i https://pypi.tuna.tsinghua.edu.cn/simple
+RUN pip install -U "jax[cpu]" -i https://pypi.tuna.tsinghua.edu.cn/simple
+RUN pip install pymc==5.14.0 -i https://pypi.tuna.tsinghua.edu.cn/simple
+RUN pip install hssm -i https://pypi.tuna.tsinghua.edu.cn/simple
+
+RUN fix-permissions "/home/${NB_USER}" &&\
+    rm -rf ~/.cache/
+
+# Import matplotlib the first time to build the font cache.
+ENV XDG_CACHE_HOME="/home/${NB_USER}/.cache/"
+
+RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" &&\
+  fix-permissions "/home/${NB_USER}"
+
+# Copy example data and scripts to the example folder
+RUN rm -r /home/$NB_USER/work && \
+  fix-permissions /home/$NB_USER
+
+COPY /docs/tutorials /home/$NB_USER/tutorials
+COPY /tests/fixtures /home/$NB_USER/tutorials/src
+
+USER root
+RUN rm -rf /home/$NB_USER/tutorials/main_tutorial
+
+USER $NB_UID
+WORKDIR $HOME