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File Format: Trinucleotide Counts
Mark Keller edited this page Feb 2, 2019
·
1 revision
A trinucleotide counts file maps trinucleotides to counts for a specific sequencing method.
It must contain the following columns:
-
Trinucleotide: The trinucleotide (e.g.ACA,ACC, etc...) -
Count: The count
An example file looks as follows:
| Trinucleotide | Count |
|---|---|
| ACA | 115415924 |
| ACC | 66550070 |
| ACG | 14381094 |
| ACT | 92058521 |
| ATA | 117976329 |
| ATC | 76401029 |
| ATG | 105094288 |
| ATT | 142651503 |
| CCA | 105547494 |
| CCC | 75238490 |
| CCG | 15801067 |
| CCT | 101628641 |
| CTA | 73791042 |
| CTC | 96335416 |
| CTG | 115950255 |
| CTT | 114180747 |
| GCA | 82414099 |
| GCC | 68090507 |
| GCG | 13621251 |
| GCT | 80004082 |
| GTA | 64915540 |
| GTC | 54055728 |
| GTG | 86012414 |
| GTT | 83421918 |
| TCA | 112085858 |
| TCC | 88336615 |
| TCG | 12630597 |
| TCT | 126566213 |
| TTA | 119020255 |
| TTC | 112827451 |
| TTG | 108406418 |
| TTT | 219915599 |