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Merge pull request #454 from massimoaria/develop
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‎NEWS

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bibliometrix v4.2.1 (Release date: 2024-05-01)
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Changes:
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* Major fixes in convert2df for Scopus and Lens export files
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* Many improvements in Biblioshiny tables and figures
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bibliometrix v4.2.0 (Release date: 2024-04-18)
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Features:

‎inst/biblioshiny/helpContent.R

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helpContent <- function(){
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info <- "<body lang=IT link='#467886' vlink='#96607D' style='tab-interval:35.4pt;
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word-wrap:break-word'>
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<div class=WordSection1>
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<p class=MsoNormal align=center style='text-align:center'><b><span lang=EN-US
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style='font-size:16.0pt;font-family:'Times New Roman',serif;color:black;
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background:white;mso-ansi-language:EN-US'>Supported Bibliographic Databases and
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Suggested File Formats<o:p></o:p></span></b></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:12.0pt;font-family:
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'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></b></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:12.0pt;font-family:
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'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></b></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:12.0pt;font-family:
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'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'>Biblioshiny</span></b><span
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lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
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color:black;background:white;mso-ansi-language:EN-US'> imports and analyzes
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collection exported from:<o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpFirst style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
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color:black;background:white;mso-ansi-language:EN-US'>Web of Science </span></em><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>(</span></em><span style='font-size:12.0pt;font-family:
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'Times New Roman',serif'><a href='http://www.webofscience.com'><span
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lang=EN-US style='background:white;mso-ansi-language:EN-US'>www.webofscience.com</span></a></span><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>)</span></em><span lang=EN-US style='font-size:12.0pt;
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font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
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EN-US'><o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
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color:black;background:white;mso-ansi-language:EN-US'>Scopus</span></em><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'> (</span></em><span style='font-size:12.0pt;
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font-family:'Times New Roman',serif'><a href='http://www.scopus.com'><span
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lang=EN-US style='background:white;mso-ansi-language:EN-US'>www.scopus.com</span></a></span><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
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font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
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EN-US'><o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><i><span lang=EN-US style='font-size:12.0pt;
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font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
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EN-US'>OpenAlex</span></i><span lang=EN-US style='font-size:12.0pt;font-family:
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'Times New Roman',serif;color:black;background:white;mso-ansi-language:EN-US'> (</span><span
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style='font-size:12.0pt;font-family:'Times New Roman',serif'><a
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href='http://www.openalex.org'><span lang=EN-US style='background:white;
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mso-ansi-language:EN-US'>www.openalex.org</span></a></span><span lang=EN-US
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style='font-size:12.0pt;font-family:'Times New Roman',serif;color:black;
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background:white;mso-ansi-language:EN-US'>) <o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
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color:black;background:white;mso-ansi-language:EN-US'>Dimensions </span></em><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>(</span></em><span style='font-size:12.0pt;font-family:
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'Times New Roman',serif'><a href='http://www.dimensions.ai'><span lang=EN-US
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style='background:white;mso-ansi-language:EN-US'>www.dimensions.ai</span></a></span><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
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font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
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EN-US'><o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
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color:black;background:white;mso-ansi-language:EN-US'>The Lens </span></em><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>(</span></em><span style='font-size:12.0pt;font-family:
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'Times New Roman',serif'><a href='http://www.lens.org'><span lang=EN-US
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style='background:white;mso-ansi-language:EN-US'>www.lens.org</span></a></span><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
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font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
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EN-US'><o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpMiddle style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
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color:black;background:white;mso-ansi-language:EN-US'>PubMed</span></em><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'> (</span></em><span style='font-size:12.0pt;
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font-family:'Times New Roman',serif'><a href='https://pubmed.ncbi.nlm.nih.gov/'><span
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lang=EN-US style='background:white;mso-ansi-language:EN-US'>https://pubmed.ncbi.nlm.nih.gov/</span></a></span><em><span
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lang=EN-US style='font-size:12.0pt;color:black;background:white;mso-ansi-language:
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EN-US;font-style:normal'>) </span></em><span lang=EN-US style='font-size:12.0pt;
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font-family:'Times New Roman',serif;color:black;background:white;mso-ansi-language:
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EN-US'><o:p></o:p></span></p>
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<p class=MsoListParagraphCxSpLast style='text-indent:-18.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span
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lang=EN-US style='font-size:12.0pt;font-family:Symbol;mso-fareast-font-family:
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Symbol;mso-bidi-font-family:Symbol;color:black;mso-ansi-language:EN-US'><span
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style='mso-list:Ignore'>·<span style='font:7.0pt 'Times New Roman''>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
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</span></span></span><![endif]><em><span lang=EN-US style='font-size:12.0pt;
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color:black;background:white;mso-ansi-language:EN-US'>Cochrane Library</span></em><span
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lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
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color:black;background:white;mso-ansi-language:EN-US'> (</span><span
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style='font-size:12.0pt;font-family:'Times New Roman',serif'><a
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href='http://www.cochranelibrary.com/'><span lang=EN-US style='background:white;
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mso-ansi-language:EN-US'>www.cochranelibrary.com/</span></a></span><span
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lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
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color:black;background:white;mso-ansi-language:EN-US'>) <o:p></o:p></span></p>
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<p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
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color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></p>
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<p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
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color:black;background:white;mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></p>
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<p style='margin-top:6.0pt;margin-right:0cm;margin-bottom:6.0pt;margin-left:
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0cm;background:white'><i><span lang=EN-US style='font-size:12.0pt;color:black;
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mso-ansi-language:EN-US'>Web of Science</span></i><span lang=EN-US
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style='font-size:12.0pt;color:black;mso-ansi-language:EN-US'>, <i>Scopus</i>
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and <i>OpenAlex</i> allow the user to export the complete set of metadata. This
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means that it will be possible to perform all analyses implemented in biblioshiny.
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<o:p></o:p></span></p>
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<p style='margin-top:6.0pt;margin-right:0cm;margin-bottom:6.0pt;margin-left:
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0cm;background:white'><span lang=EN-US style='font-size:12.0pt;color:black;
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mso-ansi-language:EN-US'>Some other databases, such as Dimensions, PubMed and
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Cochrane Library, export just a limited set of metadata types which implies
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some limitations in the choice of the analyses to carry out.<o:p></o:p></span></p>
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<p style='margin-top:6.0pt;margin-right:0cm;margin-bottom:6.0pt;margin-left:
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0cm;background:white'><span lang=EN-US style='font-size:12.0pt;color:black;
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mso-ansi-language:EN-US'>In the following table, for each database we repot the
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file formats supported and the metadata contained in each. Finally, the
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suggested file format is reported.<o:p></o:p></span></p>
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<p class=MsoNormal><span lang=EN-US style='font-size:12.0pt;font-family:'Times New Roman',serif;
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mso-ansi-language:EN-US'><o:p>&nbsp;</o:p></span></p>
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</div>
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</body>"
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return(list(info=info))
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}

‎inst/biblioshiny/server.R

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list_plot <- list(values$degreePlot)
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res <- addDataScreenWb(list_df, wb=values$wb, sheetname=sheetname)
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#values$wb <- res$wb
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values$wb <- addGgplotsWb(list_plot, wb=res$wb, sheetname, col=res$col+16, width=10, height=7, dpi=75)
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values$wb <- addGgplotsWb(list_plot, wb=res$wb, res$sheetname, col=res$col+16, width=10, height=7, dpi=75)
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#values$fileTFP <- screenSh(selector = "#cocPlot") ## screenshot
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values$fileCOC <- screenSh(values$COCnetwork$VIS, zoom = 2, type="vis")
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values$list_file <- rbind(values$list_file, c(sheetname=res$sheetname,values$fileCOC,res$col))
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list_plot <- list(values$degreePlot)
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res <- addDataScreenWb(list_df, wb=values$wb, sheetname=sheetname)
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#values$wb <- res$wb
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values$wb <- addGgplotsWb(list_plot, wb=res$wb, sheetname, col=res$col+15, width=12, height=8, dpi=75)
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values$wb <- addGgplotsWb(list_plot, wb=res$wb, res$sheetname, col=res$col+15, width=12, height=8, dpi=75)
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#values$fileTFP <- screenSh(selector = "#cocitPlot") ## screenshot
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values$fileCOCIT <- screenSh(values$COCITnetwork$VIS, zoom = 2, type="vis")
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values$list_file <- rbind(values$list_file, c(sheetname=res$sheetname,values$fileCOCIT,res$col))
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list_df <- list(values$colnet$params, values$colnet$cluster_res)
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list_plot <- list(values$degreePlot)
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res <- addDataScreenWb(list_df, wb=values$wb, sheetname=sheetname)
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values$wb <- addGgplotsWb(list_plot, wb=res$wb, sheetname, col=res$col+15, width=12, height=8, dpi=75)
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values$wb <- addGgplotsWb(list_plot, wb=res$wb, res$sheetname, col=res$col+15, width=12, height=8, dpi=75)
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#values$fileTFP <- screenSh(selector = "#colPlot") ## screenshot
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values$fileCOL <- screenSh(values$COLnetwork$VIS, zoom = 2, type="vis")
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values$list_file <- rbind(values$list_file, c(sheetname=res$sheetname,values$fileCOL,res$col))

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